Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
-
* Corresponding authors: Nitin S Baliga nbaliga@systemsbiology.org - Richard Bonneau bonneau@nyu.edu
BMC Bioinformatics 2006, 7:280 doi:10.1186/1471-2105-7-280
Accesses
- Last 30 days: 167 accesses
- Last 365 days: 2307 accesses
- All time: 14613 accesses
Cited by
BioMed Central: 14 citations
|
Proceedings
Extracting regulatory modules from gene expression data by sequential pattern mining Mingoo Kim, Hyunjung Shin, Tae Su Chung, Je-Gun Joung, Ju Han Kim BMC Genomics 2011, 12(Suppl 3):S5 (30 November 2011) |
|
Research
Construction of gene regulatory networks using biclustering and bayesian networks Fadhl M Alakwaa, Nahed H Solouma, Yasser M Kadah Theoretical Biology and Medical Modelling 2011, 8:39 (22 October 2011) |
|
Proceedings
Dunarel Badescu, Alix Boc, Abdoulaye Diallo, Vladimir Makarenkov BMC Bioinformatics 2011, 12(Suppl 9):S9 (5 October 2011) |
|
Research article
Jérémy Gruel, Michel LeBorgne, Nolwenn LeMeur, Nathalie Théret BMC Bioinformatics 2011, 12:365 (12 September 2011) |
|
Methodology article
Classification and biomarker identification using gene network modules and support vector machines Malik Yousef, Mohamed Ketany, Larry Manevitz, Louise C Showe, Michael K Showe BMC Bioinformatics 2009, 10:337 (15 October 2009) |
|
Method
Karen Lemmens, Tijl De Bie, Thomas Dhollander, Sigrid C De Keersmaecker, Inge M Thijs, Geert Schoofs, Ami De Weerdt, Bart De Moor, Jos Vanderleyden, Julio Collado-Vides, Kristof Engelen, Kathleen Marchal Genome Biology 2009, 10:R27 (6 March 2009) DISTILLER, a data integration framework for the inference of transcriptional module networks, is presented and used to investigate the condition dependency and modularity in Escherichia coli networks. |
|
Research article
Peter A DiMaggio, Scott R McAllister, Christodoulos A Floudas, Xiao-Jiang Feng, Joshua D Rabinowitz, Herschel A Rabitz BMC Bioinformatics 2008, 9:458 (27 October 2008) |
|
Methodology article
Discovering biclusters in gene expression data based on high-dimensional linear geometries Xiangchao Gan, Alan Liew, Hong Yan BMC Bioinformatics 2008, 9:209 (23 April 2008) |
|
Methodology article
Extracting expression modules from perturbational gene expression compendia Steven Maere, Patrick Van Dijck, Martin Kuiper BMC Systems Biology 2008, 2:33 (10 April 2008) |
|
Methodology article
Eigengene networks for studying the relationships between co-expression modules Peter Langfelder, Steve Horvath BMC Systems Biology 2007, 1:54 (21 November 2007) |
|
Methodology article
Henning Redestig, Daniel Weicht, Joachim Selbig, Matthew A Hannah BMC Bioinformatics 2007, 8:454 (18 November 2007) |
|
Methodology article
EDISA: extracting biclusters from multiple time-series of gene expression profiles Jochen Supper, Martin Strauch, Dierk Wanke, Klaus Harter, Andreas Zell BMC Bioinformatics 2007, 8:334 (12 September 2007) |
|
Research article
Evolution of rhodopsin ion pumps in haloarchaea Adrian K Sharma, David A Walsh, Eric Bapteste, Francisco Rodriguez-Valera, W Ford Doolittle, R Thane Papke BMC Evolutionary Biology 2007, 7:79 (18 May 2007) |
|
Proceedings
Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes Manisha Brahmachary, Christian Schönbach, Liang Yang, Enli Huang, Sin Tan, Rajesh Chowdhary, SPT Krishnan, Chin-Yo Lin, David A Hume, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Vladimir B Bajic BMC Bioinformatics 2006, 7(Suppl 5):S8 (18 December 2006) |