Table 4

TFBS V$AP1_Q4_01 prediction. Comparison of OMiMa (1-L-0/1-C-0), PWM, 1stMM, and PVLMM (order 1 and depth 1) for AP1 TFBS prediction. The performance results are the average values of 10-fold cross validation.

Model

Sn

Sp

Mc


PWM

0.857

0.997

0.860

1stMM

0.839

0.998

0.870

PVLMM

0.789

0.999

0.847

1-L-0

0.866

0.998

0.882

1-C-0

0.874

0.998

0.884


Huang et al. BMC Bioinformatics 2006 7:279   doi:10.1186/1471-2105-7-279

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