Proceedings  

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

Li C Xia, Joshua A Steele, Jacob A Cram, Zoe G Cardon, Sheri L Simmons, Joseph J Vallino, Jed A Fuhrman, Fengzhu Sun BMC Systems Biology 2011, 5(Suppl 2):S15 (14 December 2011)

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Methodology article  

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

Pietro Zoppoli, Sandro Morganella, Michele Ceccarelli BMC Bioinformatics 2010, 11:154 (25 March 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research article  

Constructing disease-specific gene networks using pair-wise relevance metric: Application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements

Wei Jiang, Xia Li, Shaoqi Rao, Lihong Wang, Lei Du, Chuanxing Li, Chao Wu, Hongzhi Wang, Yadong Wang, Baofeng Yang BMC Systems Biology 2008, 2:72 (10 August 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings  

Single-nucleotide polymorphism-gene intermixed networking reveals co-linkers connected to multiple gene expression phenotypes

Bin-Sheng Gong, Qing-Pu Zhang, Guang-Mei Zhang, Shao-Jun Zhang, Wei Zhang, Hong-Chao Lv, Fan Zhang, Sa-Li Lv, Chuan-Xing Li, Shao-Qi Rao, Xia Li BMC Proceedings 2007, 1(Suppl 1):S45 (18 December 2007)

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Research article  

Modeling human cancer-related regulatory modules by GA-RNN hybrid algorithms

Jung-Hsien Chiang, Shih-Yi Chao BMC Bioinformatics 2007, 8:91 (14 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central