Design of microarray probes for virus identification and detection of emerging viruses at the genus level

doi:10.1186/1471-2105-7-232

BMC Bioinformatics

Volume 7

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Chen CH
Hsiao HY
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Ho MS
Yang PC
Peck K

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Methodology article

Design of microarray probes for virus identification and detection of emerging viruses at the genus level

Cheng-Chung Chou¹ , Te-Tsui Lee² , Chun-Houh Chen³ , Hsiang-Yun Hsiao¹ , Yi-Ling Lin² , Mei-Shang Ho² , Pan-Chyr Yang¹^,2^* and Konan Peck²^*

¹Center for Genomic Medicine, National Taiwan University, Taipei, 100, ROC

²Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan, 115, ROC

³Institute of Statistical Science, Academia Sinica, Taipei, Taiwan, 115, ROC

author email corresponding author email* Contributed equally

BMC Bioinformatics 2006, 7:232doi:10.1186/1471-2105-7-232


Published:	28 April 2006

Additional files

Additional File 1:

Example description of step 5 of the probe design algorithm. This file contains a description of step 5 of the probe design algorithm. Example viruses are used to illustrate how this step identifies conserved sequences for a viral genus.

Format: DOC Size: 34KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional File 2:

Virus probe sequences on the test chip, and hybridization data of the probes to various samples. This file contains information on the probes and experimental hybridization data of the test chips used in an empirical approach to demonstrate the validity of the probe design algorithm.

Format: XLS Size: 31KB Download file

This file can be viewed with: Microsoft Excel Viewer