Evaluation of methods for oligonucleotide array data via quantitative real-time PCR
-
* Corresponding author: Kathleen F Kerr katiek@u.washington.edu
BMC Bioinformatics 2006, 7:23 doi:10.1186/1471-2105-7-23
Accesses
- Last 30 days: 74 accesses
- Last 365 days: 751 accesses
- All time: 6509 accesses
Cited by
BioMed Central: 20 citations
|
Short Report
Limited redundancy in genes regulated by Cyclin T2 and Cyclin T1 Rajesh Ramakrishnan, Wendong Yu, Andrew P Rice BMC Research Notes 2011, 4:260 (26 July 2011) |
|
Research article
Koji Kadota, Kentaro Shimizu BMC Bioinformatics 2011, 12:227 (6 June 2011) |
|
Methodology article
Jakub Mieczkowski, Magdalena E Tyburczy, Michal Dabrowski, Piotr Pokarowski BMC Bioinformatics 2010, 11:104 (24 February 2010) |
|
Primary research
Takashi Watanabe, Tomohiro Miura, Yusuke Degawa, Yuna Fujita, Masaaki Inoue, Makoto Kawaguchi, Chie Furihata Cancer Cell International 2010, 10:2 (21 January 2010) |
|
Research article
Endogenous control genes in complex vascular tissue samples Lasse Folkersen, Sanela Kurtovic, Anton Razuvaev, Hanna E Agardh, Anders Gabrielsen, Gabrielle Paulsson-Berne BMC Genomics 2009, 10:516 (10 November 2009) |
|
Methodology article
Steven P Wilder, Pamela J Kaisaki, Karène Argoud, Anita Salhan, Jiannis Ragoussis, Marie-Thérèse Bihoreau, Dominique Gauguier BMC Genomics 2009, 10:63 (5 February 2009) |
|
Methodology article
A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips Marta Blangiardo, Sylvia Richardson BMC Bioinformatics 2008, 9:512 (1 December 2008) |
|
Software
A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data Luca Corradi, Marco Fato, Ivan Porro, Silvia Scaglione, Livia Torterolo BMC Bioinformatics 2008, 9:480 (13 November 2008) |
|
Methodology article
Background correction using dinucleotide affinities improves the performance of GCRMA Raad Z Gharaibeh, Anthony A Fodor, Cynthia J Gibas BMC Bioinformatics 2008, 9:452 (23 October 2008) |
|
Research article
Emi Arikawa, Yanyang Sun, Jie Wang, Qiong Zhou, Baitang Ning, Stacey L Dial, Lei Guo, Jingping Yang BMC Genomics 2008, 9:328 (11 July 2008) |
|
Methodology article
Robert G Rutledge, Don Stewart BMC Biotechnology 2008, 8:47 (8 May 2008) The LRE (linear regression of efficiency) algorithm for estimating PCR efficiency is a kinetic-based sigmoidal approach that, when coupled with optical calibration, provides data comparison without using standard curves, allowing high-capacity absolute PCR quantification.
|
|
Method
Chang-Kyu Lee, Susan M Sunkin, Chihchau Kuan, Carol L Thompson, Sayan Pathak, Lydia Ng, Chris Lau, Shanna Fischer, Marty Mortrud, Cliff Slaughterbeck, Allan Jones, Ed Lein, Michael Hawrylycz Genome Biology 2008, 9:R23 (30 January 2008) This study introduces a novel method for standardized relative quantification of colorimetric in situ hybridization signal that enables a large-scale cross-platform expression level comparison of in situ hybridization with two publicly available microarray brain data sources. |
|
Research article
Analysis of probe level patterns in Affymetrix microarray data Alexander C Cambon, Abdelnaby Khalyfa, Nigel GF Cooper, Caryn M Thompson BMC Bioinformatics 2007, 8:146 (4 May 2007) |
|
Methodology article
Ann Hess, Hari Iyer BMC Genomics 2007, 8:96 (9 April 2007) |
|
Research article
Transcriptional profiling of C57 and DBA strains of mice in the absence and presence of morphine Dorothy E Grice, Ilkka Reenilä, Pekka T Männistö, Andrew I Brooks, George G Smith, Greg T Golden, Joseph D Buxbaum, Wade H Berrettini BMC Genomics 2007, 8:76 (16 March 2007) |
|
Research article
Intercenter reliability and validity of the rhesus macaque GeneChip Fenghai Duan, Eliot R Spindel, Yu-Hua Li, Robert B Norgren BMC Genomics 2007, 8:61 (28 February 2007) |
|
Research
Adrian Liston, Kristine Hardy, Yvonne Pittelkow, Susan R Wilson, Lydia E Makaroff, Aude M Fahrer, Christopher C Goodnow Genome Biology 2007, 8:R12 (21 January 2007) A transcription profiling study, together with genetic linkage data, provides a molecular map of the T-cell negative selection response |
|
Research article
Nuclear envelope transmembrane proteins (NETs) that are up-regulated during myogenesis I-Hsiung Chen, Michael Huber, Tinglu Guan, Anja Bubeck, Larry Gerace BMC Cell Biology 2006, 7:38 (24 October 2006) |
|
Correspondence
Feature-level exploration of a published Affymetrix GeneChip control dataset Rafael A Irizarry, Leslie M Cope, Zhijin Wu Genome Biology 2006, 7:404 (1 September 2006) |
|
Research
Wendong Yu, Yan Wang, Chad A Shaw, Xiao-Feng Qin, Andrew P Rice Retrovirology 2006, 3:32 (9 June 2006) |