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XcisClique: analysis of regulatory bicliques

Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S Heath*, Ruth Grene and TM Murali

BMC Bioinformatics 2006, 7:218 doi:10.1186/1471-2105-7-218

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Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression

Shisong Ma, Hans J Bohnert Genome Biology 2007, 8:R49 (4 April 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Biology |  Editor’s summary

The integration of stress-dependent, tissue- and cell-specific expression profiles and 5'-regulatory sequence motif analysis defines a common stress transcriptome, identifies major motifs for stress response, and places stress response in the context of tissue and cell lineages in the Arabidopsis root.

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