 SoftwareGenoLink: a graph-based querying and browsing system for investigating the function of genes and proteinsPatrick Durand1,5 1 Hybrigenics SA, 3–5 Impasse Reille, 75014 Paris, France 2 AGC, UMR CNRS 8030 – Genoscope, 2 rue Gaston Crémieux, 91000 Evry, France 3 Genome Express, 11 Chemin des Prés, 38944 Meylan, France 4 INRIA Rhône-Alpes, 655 Avenue de l'Europe, 38334 Saint-Ismier Cedex, France 5 IRISA-INRIA, Campus de Beaulieu, 35402 Rennes Cedex, France 6 DRDC/BIM, CEA-Grenoble, 17 Avenue des martyrs, 38054 Grenoble Cedex 9, France 7 Serono Genetics Institute, Route Nationale 7, 91030 Evry Cedex, France
BMC Bioinformatics 2006, 7:21doi:10.1186/1471-2105-7-21
Additional filesAdditional File 1: GenoLink query graph examples. Each row corresponds to a different query (from simple to more sophisticated ones). The Query column gives an informal statement of the query, the Query-Graph column displays the corresponding graph pattern, that has to be constructed in the Query Builder (Figure 5). The Results column indicates the number of distinct results obtained (see text for information about the origin of data). The Time column indicates the execution time (in seconds). In the sake of clarity, the following code as been used to denote the type of edges: ILO for IsLocatedOn, IRO for IsRepliconOf, ICF for IsCodingFor, HPA for HasPolypeptideAnnotation, IIG for IsInGeneOrtholog, CD for ContainsDomain and HPIW for HasPhysicalInteractionWith. When applicable, constraints are displayed in italics under the concerned vertex or edge. Format: PDF Size: 27KB Download file This file can be viewed with: Adobe Acrobat Reader |
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