BMC Bioinformatics

official impact factor 3.03

Open Access Highly Access Research article

Profiling alternatively spliced mRNA isoforms for prostate cancer classification

Chaolin Zhang1,2, Hai-Ri Li3, Jian-Bing Fan4, Jessica Wang-Rodriguez5,7, Tracy Downs6,7, Xiang-Dong Fu3 and Michael Q Zhang1*

Author Affiliations

1 Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA

2 Department of Biomedical Engineering, State University of New York at Stony Brook, NY 11794, USA

3 Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA

4 Illumina, Inc. San Diego, CA 92121, USA

5 Department of Pathology, University of California, San Diego, La Jolla, CA 92093, USA

6 Department of Surgery, University of California, San Diego, La Jolla, CA 92093, USA

7 VA San Diego Healthcare System, San Diego, CA 92161, USA

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BMC Bioinformatics 2006, 7:202 doi:10.1186/1471-2105-7-202

Published: 11 April 2006

Additional files

Additional File 1:

Supplementary table S1. Splice isoforms differentially expressed between prostate cancer and normal samples (q-value<0.05).

Format: XLS Size: 66KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 2:

Supplementary table S2. Significant isoforms from those genes that are also called significant at overall mRNA level (q-value<0.05).

Format: XLS Size: 84KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional File 3:

Supplementary table S3. Significant isoforms from those genes that are not significant at overall mRNA level (q-value<0.05).

Format: XLS Size: 32KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data