BMC Bioinformatics

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QPath: a method for querying pathways in a protein-protein interaction network

Tomer Shlomi, Daniel Segal, Eytan Ruppin and Roded Sharan*

BMC Bioinformatics 2006, 7:199 doi:10.1186/1471-2105-7-199

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BioMed Central: 8 citations

Methodology article   Open Access Highly Accessed

Propagating semantic information in biochemical network models

Marvin Schulz, Edda Klipp, Wolfram Liebermeister BMC Bioinformatics 2012, 13:18 (30 January 2012)

Semantic propagation is a new method that applies annotation to systems biology models, enabling comparisons based on both their own annotations, and those of surrounding elements in the network, facilitating the alignment of models with missing annotations

Research   Open Access

Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception

Xiaoning Qian, Byung-Jun Yoon BMC Bioinformatics 2011, 12(Suppl 1):S19 (15 February 2011)

Methodology article   Open Access Highly Accessed

Algorithms for effective querying of compound graph-based pathway databases

Ugur Dogrusoz, Ahmet Cetintas, Emek Demir, Ozgun Babur BMC Bioinformatics 2009, 10:376 (16 November 2009)

Methodology article   Open Access Highly Accessed

BowTieBuilder: modeling signal transduction pathways

Jochen Supper, Lucía Spangenberg, Hannes Planatscher, Andreas Dräger, Adrian Schröder, Andreas Zell BMC Systems Biology 2009, 3:67 (30 June 2009)

Software   Open Access

Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis

Yan Huang, Yong Bao, Shu Guo, Yan Wang, Chun Zhou, Yu Li BMC Bioinformatics 2008, 9:538 (16 December 2008)

Commentary   Open Access Highly Accessed

Biomolecular network querying: a promising approach in systems biology

Shihua Zhang, Xiang-Sun Zhang, Luonan Chen BMC Systems Biology 2008, 2:5 (18 January 2008)

Research article   Open Access Highly Accessed

PathFinder: mining signal transduction pathway segments from protein-protein interaction networks

Gurkan Bebek, Jiong Yang BMC Bioinformatics 2007, 8:335 (13 September 2007)

Research article   Open Access

Comprehensive analysis of co-occurring domain sets in yeast proteins

Inbar Cohen-Gihon, Ruth Nussinov, Roded Sharan BMC Genomics 2007, 8:161 (11 June 2007)