The Gaggle: An open-source software system for integrating bioinformatics software and data sources
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* Corresponding author: Nitin S Baliga nbaliga@systemsbiology.org
BMC Bioinformatics 2006, 7:176 doi:10.1186/1471-2105-7-176
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BioMed Central: 8 citations
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Brief reports
GTC: A web server for integrating systems biology data with web tools and desktop applications Dan Tenenbaum, J Christopher Bare, Nitin S Baliga Source Code for Biology and Medicine 2010, 5:7 (13 July 2010) |
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Research article
Marc T Facciotti, Wyming L Pang, Fang-yin Lo, Kenia Whitehead, Tie Koide, Ken-ichi Masumura, Min Pan, Amardeep Kaur, David J Larsen, David J Reiss, Linh Hoang, Ewa Kalisiak, Trent Northen, Sunia A Trauger, Gary Siuzdak, Nitin S Baliga BMC Systems Biology 2010, 4:64 (14 May 2010) |
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Proceedings
BioNetBuilder2.0: bringing systems biology to chicken and other model organisms Jay H Konieczka, Kevin Drew, Alex Pine, Kevin Belasco, Sean Davey, Tatiana A Yatskievych, Richard Bonneau, Parker B Antin BMC Genomics 2009, 10(Suppl 2):S6 (14 July 2009) |
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Software
J Christopher Bare, Paul T Shannon, Amy K Schmid, Nitin S Baliga BMC Bioinformatics 2007, 8:456 (19 November 2007) |
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Software
ProbCD: enrichment analysis accounting for categorization uncertainty Ricardo ZN Vêncio, Ilya Shmulevich BMC Bioinformatics 2007, 8:383 (12 October 2007) |
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Software
Bioclipse: an open source workbench for chemo- and bioinformatics Ola Spjuth, Tobias Helmus, Egon L Willighagen, Stefan Kuhn, Martin Eklund, Johannes Wagener, Peter Murray-Rust, Christoph Steinbeck, Jarl ES Wikberg BMC Bioinformatics 2007, 8:59 (22 February 2007) |
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Methodology article
David J Reiss, Nitin S Baliga, Richard Bonneau BMC Bioinformatics 2006, 7:280 (2 June 2006) |
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Method
Richard Bonneau, David J Reiss, Paul Shannon, Marc Facciotti, Leroy Hood, Nitin S Baliga, Vesteinn Thorsson Genome Biology 2006, 7:R36 (10 May 2006) The Inferelator, a method for deriving genome-wide transcriptional regulatory interactions, successfully predicted global expression in Halobacterium under novel perturbations.
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