BioWarehouse: a bioinformatics database warehouse toolkit
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* Corresponding author: Peter D Karp pkarp@ai.sri.com
BMC Bioinformatics 2006, 7:170 doi:10.1186/1471-2105-7-170
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BioMed Central: 11 citations
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Research
Paolo Pannarale, Domenico Catalano, Giorgio De Caro, Giorgio Grillo, Pietro Leo, Graziano Pappadà, Francesco Rubino, Gaetano Scioscia, Flavio Licciulli BMC Bioinformatics 2012, 13(Suppl 4):S4 (28 March 2012) |
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Research
Transparent mediation-based access to multiple yeast data sources using an ontology driven interface Abdelaali Briache, Kamar Marrakchi, Amine Kerzazi, Ismael Navas-Delgado, Badr D Rossi Hassani, Khalid Lairini, José F Aldana-Montes BMC Bioinformatics 2012, 13(Suppl 1):S7 (25 January 2012) |
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Research article
Critical assessment of human metabolic pathway databases: a stepping stone for future integration Miranda D Stobbe, Sander M Houten, Gerbert A Jansen, Antoine HC van Kampen, Perry D Moerland BMC Systems Biology 2011, 5:165 (14 October 2011) |
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Software
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL Kris Laukens, Jens Hollunder, Thanh Dang, Geert De Jaeger, Martin Kuiper, Erwin Witters, Alain Verschoren, Koenraad Van Leemput BMC Bioinformatics 2010, 11:360 (1 July 2010) |
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Research
XML-based approaches for the integration of heterogeneous bio-molecular data Marco Mesiti, Ernesto Jiménez-Ruiz, Ismael Sanz, Rafael Berlanga-Llavori, Paolo Perlasca, Giorgio Valentini, David Manset BMC Bioinformatics 2009, 10(Suppl 12):S7 (15 October 2009) |
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Methodology article
Ultra-Structure database design methodology for managing systems biology data and analyses Christopher W Maier, Jeffrey G Long, Bradley M Hemminger, Morgan C Giddings BMC Bioinformatics 2009, 10:254 (19 August 2009) |
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Software
GMODWeb: a web framework for the generic model organism database Brian D O'Connor, Allen Day, Scott Cain, Olivier Arnaiz, Linda Sperling, Lincoln D Stein Genome Biology 2008, 9:R102 (20 June 2008) GMODWeb is a software framework designed to speed the development of websites for model organism databases. |
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Proceedings
Olivo Miotto, AT Heiny, Tin Tan, J Thomas August, Vladimir Brusic BMC Bioinformatics 2008, 9(Suppl 1):S18 (13 February 2008) |
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Software
Userscripts for the Life Sciences Egon L Willighagen, Noel M O'Boyle, Harini Gopalakrishnan, Dazhi Jiao, Rajarshi Guha, Christoph Steinbeck, David J Wild BMC Bioinformatics 2007, 8:487 (21 December 2007) Life scientists can enrich and tune web pages 'on-the-fly' - including BioMed Central's - with userscripts that automatically collect and display information from a number of other online biology and chemistry resources and blogs.
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Research article
A survey of orphan enzyme activities Yannick Pouliot, Peter D Karp BMC Bioinformatics 2007, 8:244 (10 July 2007) |
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Software
FlyMine: an integrated database for Drosophila and Anopheles genomics Rachel Lyne, Richard Smith, Kim Rutherford, Matthew Wakeling, Andrew Varley, Francois Guillier, Hilde Janssens, Wenyan Ji, Peter Mclaren, Philip North, Debashis Rana, Tom Riley, Julie Sullivan, Xavier Watkins, Mark Woodbridge, Kathryn Lilley, Steve Russell, Michael Ashburner, Kenji Mizuguchi, Gos Micklem Genome Biology 2007, 8:R129 (5 July 2007) This novel web-based database provides unique accessibility and querying of integrated genomic and proteomic data for |