Table 5

Abalone sperm lysin data [23] analyzed with Model A1 and 4 (hydrophobicity, volume, polarity and charge) partitions: sites that have high posterior probabilities in each site class.

Property

Sites identified

ω≤1, γ≤1

ω≤1, γ≥1

ω≥1, γ≤1

ω≥1, γ≥1

hydrophobicity

16, 20, 23,26, 31,34,39,48, 52,54,55,57, 58,59,60,62, 65,66,77,78,84, 85,89,90,91,92, 93,102,111,112, 118

none

47,69,129

10,12,32,33,36, 37,40,44,45,64, 67,68,70,72,74, 82,83,86,87,106, 107,113,116, 120,123,127

volume

13,18,19,23,29, 35,39,50,51,53, 54,55,56,57,65, 76,77,78,85,89, 90,92,93,94,95, 102,111,112,117

17,25,27,30,40, 68,69,73,80,96, 99,101,114, 127,129,131

none

11,32,33,36,41, 64,70,74,83,86, 87,120

polarity

16,18,20,23,26, 28,31,34,35,38, 39,46,48,50,52, 55,56,57,58,59, 60,62,65,66,76, 77,78,84,85,89, 90,91,92,93,94, 95,102,104,112, 118,128,130

none

43

10,11,12,14,15, 32,33,36,37,40, 44,64,67,70,74, 79,83,86,87,106, 116,120,123,127

charge

16,20,23,28,29, 46,48,52,54,59, 65,84,85,91,92, 102,104,109,111, 112,117,118,128

68,69,96,97,98, 129

30,33,47,63,64, 71,75,79,80,81, 99,113,116,121, 124,127

10,14,44,67, 70,74,115,120

Site listed have posterior probabilities >0.95 being in the indicated site class. Those that are in bold have posterior probabilities >0.99.

Wong et al. BMC Bioinformatics 2006 7:148   doi:10.1186/1471-2105-7-148