BMC Bioinformatics

official impact factor 3.03

Open Access Highly Access

How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results

Frank F Millenaar*, John Okyere, Sean T May, Martijn van Zanten, Laurentius ACJ Voesenek and Anton JM Peeters

BMC Bioinformatics 2006, 7:137 doi:10.1186/1471-2105-7-137

Accesses  

  • Last 30 days: 92 accesses
  • Last 365 days: 960 accesses
  • All time: 7977 accesses

Cited by

BioMed Central: 13 citations

Methodology article   Open Access Highly Accessed

Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements

Jakub Mieczkowski, Magdalena E Tyburczy, Michal Dabrowski, Piotr Pokarowski BMC Bioinformatics 2010, 11:104 (24 February 2010)

Research article   Open Access Highly Accessed

Prioritizing genes for follow-up from genome wide association studies using information on gene expression in tissues relevant for type 2 diabetes mellitus

Hemang Parikh, Valeriya Lyssenko, Leif C Groop BMC Medical Genomics 2009, 2:72 (31 December 2009)

Research article   Open Access Highly Accessed

An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.)

Albert Mascarell-Creus, Joaquin Cañizares, Josep Vilarrasa-Blasi, Santiago Mora-García, José Blanca, Daniel Gonzalez-Ibeas, Montserrat Saladié, Cristina Roig, Wim Deleu, Belén Picó-Silvent, Nuria López-Bigas, Miguel A Aranda, Jordi Garcia-Mas, Fernando Nuez, Pere Puigdomènech, Ana I Caño-Delgado BMC Genomics 2009, 10:467 (12 October 2009)

An oligo-based microarray derived from over 30,000 melon (Cucumis melo) ESTs provides a platform for the functional genomic study of experimental conditions such as fruit quality and response to viral and fungal infections.

Research article   Open Access

Comparative gene expression profiles between heterotic and non-heterotic hybrids of tetraploid Medicago sativa

Xuehui Li, Yanling Wei, Dan Nettleton, E Charles Brummer BMC Plant Biology 2009, 9:107 (13 August 2009)

Software   Open Access

A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data

Luca Corradi, Marco Fato, Ivan Porro, Silvia Scaglione, Livia Torterolo BMC Bioinformatics 2008, 9:480 (13 November 2008)

Research   Open Access

ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses

Todd H Stokes, JT Torrance, Henry Li, May D Wang BMC Bioinformatics 2008, 9(Suppl 6):S18 (28 May 2008)

Proceedings   Open Access

Effects on linkage analyses of different Affymetrix expression measures as quantitative trait phenotypes

Juan Peralta, Laura Almasy BMC Proceedings 2007, 1(Suppl 1):S158 (18 December 2007)

Research   Open Access Highly Accessed

Genetic subtraction profiling identifies genes essential for Arabidopsis reproduction and reveals interaction between the female gametophyte and the maternal sporophyte

Amal J Johnston, Patrick Meier, Jacqueline Gheyselinck, Samuel EJ Wuest, Michael Federer, Edith Schlagenhauf, Jörg D Becker, Ueli Grossniklaus Genome Biology 2007, 8:R204 (3 October 2007)

Genetic subtraction and expression profiling of wild-type Arabidopsis and a sporophytic mutant lacking an embryo sac identified 1,260 genes expressed in the embryo sac; a total of 527 genes were identified for their expression in ovules of mutants lacking an embryo sac.

Method   Open Access Highly Accessed

Exon arrays provide accurate assessments of gene expression

Karen Kapur, Yi Xing, Zhengqing Ouyang, Wing Wong Genome Biology 2007, 8:R82 (15 May 2007)

A strategy for estimating gene expression on Affymetrix exon arrays suggests that these arrays may provide more accurate measurements of gene expression than traditional 3’ arrays.

Research article   Open Access Highly Accessed

Analysis of probe level patterns in Affymetrix microarray data

Alexander C Cambon, Abdelnaby Khalyfa, Nigel GF Cooper, Caryn M Thompson BMC Bioinformatics 2007, 8:146 (4 May 2007)

Research article   Open Access

A meta-analysis of kidney microarray datasets: investigation of cytokine gene detection and correlation with rt-PCR and detection thresholds

Walter D Park, Mark D Stegall BMC Genomics 2007, 8:88 (30 March 2007)

Research article   Open Access

Transcriptional profiling of C57 and DBA strains of mice in the absence and presence of morphine

Dorothy E Grice, Ilkka Reenilä, Pekka T Männistö, Andrew I Brooks, George G Smith, Greg T Golden, Joseph D Buxbaum, Wade H Berrettini BMC Genomics 2007, 8:76 (16 March 2007)

Research   Open Access

AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data

Guoqing Lu, The V Nguyen, Yuannan Xia, Michael Fromm BMC Bioinformatics 2006, 7(Suppl 4):S26 (12 December 2006)