Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information

doi:10.1186/1471-2105-7-124

BMC Bioinformatics

Volume 7

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Research article

Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information

Jiangning Song¹ , Kevin Burrage¹ , Zheng Yuan² and Thomas Huber¹

¹Advanced Computational Modelling Centre, The University of Queensland, Brisbane Qld 4072, Australia

²Institute for Molecular Bioscience and ARC Centre in Bioinformatics, The University of Queensland, Brisbane Qld 4072, Australia

author email corresponding author email

BMC Bioinformatics 2006, 7:124doi:10.1186/1471-2105-7-124


Published:	9 March 2006

Additional files

Additional file 1:

The PDB codes of 2424 protein chains used in this study. The fifth character in PDB codes represents the peptide chain name and "_" means that it has only one peptide chain.

Format: DOC Size: 160KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional file 2:

This file contains the CisPep PDB codes, proline cis peptide records, corresponding dihedral angles and protein sequences.

Format: TXT Size: 370KB Download file

Additional file 3:

This file contains the TransPep PDB codes and their protein sequences.

Format: TXT Size: 351KB Download file