Table 1 |
|||||
|
Number of probe sets and redundant probe sets used in two-sample t-tests between liver and central nervous system (CNS) cell lines from the GeneLogic dilution dataset. |
|||||
|
t-test |
Total # PS a (filtered) |
# RPS |
% RPS |
# unigenesb |
# unigenes for RPS |
|
|
|||||
|
Liver 1.25 vs. CNS 1.25 |
7257 |
1998 |
27.53 |
5812 |
901 |
|
Liver 2.5 vs. CNS 2.5 |
7329 |
2017 |
27.52 |
5871 |
909 |
|
Liver 5.0 vs. CNS 5.0 |
7755 |
2224 |
28.68 |
6164 |
998 |
|
Liver 7.5 vs. CNS 7.5 |
7905 |
2287 |
28.39 |
6265 |
1021 |
|
Liver 10.0 vs. CNS 10.0 |
7456 |
2092 |
28.06 |
5952 |
940 |
|
Liver 20.0 vs. CNS 20.0 |
7386 |
2042 |
27.65 |
5906 |
918 |
|
|
|||||
|
Notation: PS represents probe sets, RPS redundant probe sets. The numbers following Liver and CNS represent cRNA concentration. a. The total # of probe sets in HG-U95A GeneChip is 12,627. b. Only those with unigene labels were counted. |
|||||
|
Hu and Willsky BMC Bioinformatics 2006 7:12 doi:10.1186/1471-2105-7-12 |
|||||
