Figure 3.

Co-occurrence rate of replicate RPSs in DEGs for GeneLogic dataset. The fraction of replicate RPSs out of all RPSs in DEG list for data from probe set algorithm RMA, MAS5.0, dChip-PM, and dChip-PM/PM is shown at individual FDR cutoffs. Comparison results for 6 dilution levels are shown separately: (a) for dilution level 1.25, (b) for dilution level 2.5, (c) for dilution level 5.0, (d) for dilution level 7.5, (e) for dilution level 10.0, and (f) for dilution level 20.0