|
Extracted sub-graphs. EcoCyc-ids of the reactions, their corresponding enzyme annotations, their observed regulation due to a changing from aerobic to anaerobic conditions and the confidence value for this observation. Listed are the first 10 extracted sub-graphs. |
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| id |
enzymes |
regulation |
p-value |
|
|
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| 1st extracted sub-graph (formate metabolism) |
|||
| FHLMULTI-RXN |
formate hydrogenlyase complex |
1 |
3.8e-16 |
| FORMYLTHFDEFORMYL-RXN |
formyltetrahydrofolate deformylase |
-1 |
0.0015 |
| GTP-CYCLOHYDRO-I-RXN |
GTP cyclohydrolase I |
-1 |
0.00088 |
| GTP-CYCLOHYDRO-II-RXN |
GTP cyclohydrolase II |
(1) |
0.57 |
| H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN |
dihydroneopterin triphosphate pyrophosphohydrolase |
(0) |
1 |
| H2NTPEPIM-RXN |
dihydroneopterin triphosphate 2'-epimerase |
-1 |
1.024e-05 |
| KETOBUTFORMLY-RXN |
2-ketobutyrate formate-lyase |
(-1) |
0.20 |
| PYRUVFORMLY-RXN |
pyruvate formate-lyase |
1 |
2.2e-18 |
| RXN0-1382 |
formyl-CoA transferase |
-1 |
0.023 |
| TRANS-RXN-1 |
transporter |
1 |
4.5e-20 |
| 2nd extracted sub-graph (formate metabolism) |
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| FHLMULTI-RXN |
formate hydrogenlyase complex |
1 |
3.8e-16 |
| FORMYLTHFDEFORMYL-RXN |
formyltetrahydrofolate deformylase |
-1 |
0.0015 |
| GTP-CYCLOHYDRO-I-RXN |
GTP cyclohydrolase I |
-1 |
0.00088 |
| GTP-CYCLOHYDRO-II-RXN |
GTP cyclohydrolase II |
(1) |
0.57 |
| KETOBUTFORMLY-RXN |
2-ketobutyrate formate-lyase |
(-1) |
0.20 |
| PYRUVFORMLY-RXN |
pyruvate formate-lyase |
1 |
2.2e-18 |
| RXN0-443 |
(0) |
1 |
|
| TRANS-RXN-1 |
transporter |
1 |
4.5e-20 |
| 3rd extracted sub-graph (leucine) |
|||
| ABC-35-RXN |
Transporters |
-1 |
4.1e-09 |
| BRANCHED-CHAINAMINOTRANSFERLEU-RXN |
branched chain amino acid aminotransferase |
1 |
0.080 |
| LEUCINE – TRNA-LIGASE-RXN |
leucyl-tRNA synthetase |
(1) |
0.13 |
| LEUCYLTRANSFERASE-RXN |
leucyl phenylalanyl-tRNA-protein transferase |
1 |
0.011 |
| RXN0-261 |
(0) |
1 |
|
| TRANS-RXN-126B |
transporter |
1 |
6.2e-10 |
| 4th extracted sub-graph (aspartate metabolism) |
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| 2-METHYLCITRATE-SYNTHASE-RXN |
methylcitrate synthase |
(1) |
0.32 |
| ARGSUCCINSYN-RXN |
argininosuccinate synthase |
1 |
0.027 |
| ASNSYNA-RXN |
aspartate-ammonia ligase |
1 |
0.0032 |
| ASPARTASE-RXN |
aspartate ammonia-lyase |
1 |
1.6e-06 |
| ASPARTATE – TRNA-LIGASE-RXN |
aspartyl-tRNA synthetase |
(1) |
0.61 |
| ASPARTATEKIN-RXN |
aspartate kinase I |
1 |
0.0082 |
| ASPCARBTRANS-RXN |
aspartate carbamoyltransferase |
(-1) |
0.16 |
| ASPDECARBOX-RXN |
aspartate-1-decarboxylase |
(1) |
0.23 |
| L-ASPARTATE-OXID-RXN |
L-aspartate oxidase |
1 |
0.00033 |
| PEPCARBOXYKIN-RXN |
phosphoenolpyruvate carboxykinase (ATP) |
(1) |
0.58 |
| PEROXID-RXN |
thiol peroxidase |
(1) |
0.20 |
| PYRIDOXKIN-RXN |
pyridoxal kinase 2 |
(-1) |
0.045 |
| PYROXALTRANSAM-RXN |
pyridoxamine-oxaloacetate transaminase |
(0) |
1 |
| QUINOLINATE-SYNTHE-MULTI-RXN |
quinolinate synthetase |
1 |
0.00051 |
| RXN0-267 |
thiol peroxidase 2 |
-1 |
8.1e-08 |
| SAICARSYN-RXN |
phosphoribosylaminoimidazole- succinocarboxamide synthase |
1 |
9.0e-07 |
| TRANS-RXN-106A |
transporter |
1 |
0.015 |
| TRANS-RXN-122A |
transporter |
1 |
2.2e-06 |
| 5th extracted sub-graph (formate metabolism) |
|||
| FHLMULTI-RXN |
formate hydrogenlyase complex |
1 |
3.8e-16 |
| FORMYLTHFDEFORMYL-RXN |
formyltetrahydrofolate deformylase |
-1 |
0.0015 |
| GTP-CYCLOHYDRO-I-RXN |
GTP cyclohydrolase I |
-1 |
0.00088 |
| GTP-CYCLOHYDRO-II-RXN |
GTP cyclohydrolase II |
(1) |
0.57 |
| H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN |
dihydroneopterin triphosphate pyrophosphohydrolase |
(0) |
1 |
| H2NTPEPIM-RXN |
dihydroneopterin triphosphate 2'-epimerase |
-1 |
1.0e-05 |
| KETOBUTFORMLY-RXN |
2-ketobutyrate formate-lyase |
(-1) |
0.2 |
| PYRUVFORMLY-RXN |
pyruvate formate-lyase |
1 |
2.2e-18 |
| RXN0-443 |
(0) |
1 |
|
| TRANS-RXN-1 |
transporter |
1 |
4.5e-20 |
| 6th extracted sub-graph (formate metabolism) |
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| 3.5.1.88-RXN |
dihydroxyacetone kinase |
-1 |
0.059 |
| FORMYLTHFDEFORMYL-RXN |
formyltetrahydrofolate deformylase |
-1 |
0.0015 |
| GARTRANSFORMYL2-RXN |
GAR transformylase 2 |
(-1) |
0.41 |
| GTP-CYCLOHYDRO-I-RXN |
GTP cyclohydrolase I |
-1 |
0.00088 |
| METHENYLTHFCYCLOHYDRO-RXN |
methenyltetrahydrofolate cyclohydrolase |
1 |
0.0052 |
| PYRUVFORMLY-RXN |
pyruvate formate-lyase |
1 |
2.2e-18 |
| RXN0-1382 |
formyl-CoA transferase |
-1 |
0.023 |
| RXN0-443 |
(0) |
1 |
|
| TRANS-RXN-1 |
transporter |
1 |
4.5e-20 |
| 7th extracted sub-graph (lysine) |
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| DIAMINOPIMDECARB-RXN |
diaminopimelate decarboxylase |
-1 |
0.0012 |
| GLU6PDEHYDROG-RXN |
glucose 6-phosphate-1-dehydrogenase |
1 |
0.027 |
| LYSDECARBOX-RXN |
lysine decarboxylase 2 |
(-1) |
0.14 |
| LYSINE – TRNA-LIGASE-RXN |
lysyl tRNA synthetase |
-1 |
0.0060 |
| RXN0-1961 |
tRNA-Ile-lysidine synthetase |
-1 |
0.015 |
| RXN0-963 |
fructoselysine 6-phosphate deglycase |
1 |
0.0059 |
| TRANS-RXN-58 |
Transporter |
-1 |
0.049 |
| TRANS-RXN-68 |
Transporter |
(0) |
0.81 |
| 8th extracted sub-graph (Glycolysis) |
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| 6-PHOSPHO-BETA-GLUCOSIDASE-RXN |
phenylacetate-CoA ligase |
1 |
2.9e-06 |
| AMYLOMALT-RXN |
amylomaltase |
(-1) |
0.34 |
| GALACTURIDYLYLTRANS-RXN |
UDP-glucose-hexose-1-phosphate uridylyltransferase |
-1 |
1.1e-06 |
| GLUCDEHYDROG-RXN |
glucose dehydrogenase (pyrroloquinoline-quinone) |
-1 |
5.3e-05 |
| GLUCOKIN-RXN |
glucokinase |
1 |
1.4e-07 |
| GLUCOSE-1-PHOSPHAT-RXN |
glucose-1-phosphatase |
(0) |
0.78 |
| MALTACETYLTRAN-RXN |
maltose acetyltransferase |
(-1) |
0.43 |
| MALTDEG-RXN |
maltose degrading enzyme |
(-1) |
0.34 |
| MALTODEG-RXN |
maltose degrading enzyme 2 |
(-1) |
0.34 |
| MALTODEXGLUCOSID-RXN |
maltodextrin glucosidase |
(1) |
0.26 |
| PGLUCISOM-RXN |
phosphoglucose isomerase |
1 |
3.3e-07 |
| RXN0-2543 |
flavorubredoxin reductase |
(-1) |
0.13 |
| TRE6PHYDRO-RXN |
trehalose-6-phosphate hydrolase |
(-1) |
0.097 |
| TREHALOSE6PSYN-RXN |
trehalose-6-phosphate synthase |
(0) |
0.87 |
| 9th extracted sub-graph (Glycolysis/NAD biosynthesis) |
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| QUINOLINATE-SYNTHA-RXN |
quinolinate synthetase A |
1 |
0.0016 |
| QUINOLINATE-SYNTHE-MULTI-RXN |
quinolinate synthetase |
1 |
0.00051 |
| RHAMNULPALDOL-RXN |
rhamnulose-1-phosphate aldolase |
(-1) |
0.25 |
| RXN0-313 |
fructose 6-phosphate aldolase 1 |
(-1) |
0.51 |
| TAGAALDOL-RXN |
tagatose-16-bisphosphate aldolase 1 |
(1) |
0.60 |
| TRIOSEPISOMERIZATION-RXN |
triose phosphate isomerase |
1 |
1.9e-12 |
| 10th extracted sub-graph (aspartate metabolism) |
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| 2-METHYLCITRATE-SYNTHASE-RXN |
methylcitrate synthase |
(1) |
0.32 |
| ARGSUCCINSYN-RXN |
argininosuccinate synthase |
1 |
0.027 |
| ASNSYNA-RXN |
aspartate-ammonia ligase |
1 |
0.0032 |
| ASPARTASE-RXN |
aspartate ammonia-lyase |
1 |
1.6e-06 |
| ASPARTATE – TRNA-LIGASE-RXN |
aspartyl-tRNA synthetase |
(1) |
0.61 |
| ASPARTATEKIN-RXN |
aspartate kinase I |
1 |
0.0082 |
| ASPCARBTRANS-RXN |
aspartate carbamoyltransferase |
(-1) |
0.16 |
| ASPDECARBOX-RXN |
aspartate-1-decarboxylase |
(1) |
0.23 |
| L-ASPARTATE-OXID-RXN |
L-aspartate oxidase |
1 |
0.00033 |
| PEPCARBOXYKIN-RXN |
phosphoenolpyruvate carboxykinase (ATP) |
(1) |
0.57 |
| PEROXID-RXN |
thiol peroxidase |
(1) |
0.20 |
| PYRIDOXKIN-RXN |
pyridoxal kinase 2 |
-1 |
0.045 |
| PYROXALTRANSAM-RXN |
pyridoxamine-oxaloacetate transaminase |
(0) |
1 |
| QUINOLINATE-SYNTHE-MULTI-RXN |
quinolinate synthetase |
1 |
0.00051 |
| RXN0-267 |
thiol peroxidase 2 |
-1 |
8.1e-08 |
| SAICARSYN-RXN |
phosphoribosylaminoimidazole- succinocarboxamide synthase |
1 |
9.0e-07 |
| TRANS-RXN-122A |
transporter |
1 |
2.2e-06 |
König et al. BMC Bioinformatics 2006 7:119 doi:10.1186/1471-2105-7-119 |
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