Table 1 |
||
|
Comparative analysis of sequence trimming by Lucy and MAGIC-SPP. Both Lucy and MAGIC-SPP were used with their default parameters. The adapter for this cDNA library had a length of 11 nucleotides. All sequences are 5' ESTs. |
||
|
Lucy |
MAGIC-SPP |
|
|
|
||
|
Input sequences |
17952 |
17952 |
|
Passing sequence reads |
14490 |
15596 |
|
Sequence reads with at least one adapter remaining |
2399 |
681 |
|
Average trimmed length in nucleotides |
574 |
570 |
|
Total base calls in trimmed reads |
8317260 |
8889720 |
|
|
||
|
Liang et al. BMC Bioinformatics 2006 7:115 doi:10.1186/1471-2105-7-115 |
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