BMC Bioinformatics

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Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs

Victor X Jin, Gregory AC Singer, Francisco J Agosto-Pérez, Sandya Liyanarachchi and Ramana V Davuluri*

BMC Bioinformatics 2006, 7:114 doi:10.1186/1471-2105-7-114

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Research   Open Access

Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes

Chungoo Park, Kateryna D Makova Genome Biology 2009, 10:R10 (28 January 2009)

Gene expression data for duplicated gene pairs in humans provides insights into the regulatory factors affecting the expression divergence of these genes and implications for their evolution.

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Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach

Firoz Anwar, Syed Baker, Taskeed Jabid, Md Mehedi Hasan, Mohammad Shoyaib, Haseena Khan, Ray Walshe BMC Bioinformatics 2008, 9:414 (4 October 2008)

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Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs

Hirokazu Chiba, Riu Yamashita, Kengo Kinoshita, Kenta Nakai BMC Genomics 2008, 9:152 (2 April 2008)

Review   Open Access

Computational analyses of eukaryotic promoters

Michael Q Zhang BMC Bioinformatics 2007, 8(Suppl 6):S3 (27 September 2007)