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Open AccessHighly AccessResearch article

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

Kenzie D MacIsaac* 1,2 email, Ting Wang* 3 email, D Benjamin Gordon1,4 email, David K Gifford1,2 email, Gary D Stormo3 email and Ernest Fraenkel1,2,5 email

1Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA 02142, USA

2MIT Computer Science and Artificial Intelligence Laboratory, 32 Vassar St., Cambridge, MA 02139, USA

3Department of Genetics, Washington University Medical School, St. Louis, MO 63110, USA

4Agilent Technologies, 245 1st Street, Cambridge, MA 02142, USA

5Biological Engineering Division, Massachusetts Institute of Technology, Cambridge, MA 02139, USA

author email corresponding author email* Contributed equally

BMC Bioinformatics 2006, 7:113doi:10.1186/1471-2105-7-113

Published: 7 March 2006

Additional files

Additional File 1:

Saccharomyces cerevisiae transcription factors with known DNA-binding specificities

Format: DOC Size: 191KB Download file

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Additional File 2:

Factor Specificities in the New Yeast Regulatory Map

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Additional File 3:

Performance comparison between PhyloCon, Converge and the tree sampler implemented in Li and Wong.

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Additional File 4:

Details of the Converge Algorithm.

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