VANTED: A system for advanced data analysis and visualization in the context of biological networks
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* Corresponding author: Christian Klukas klukas@ipk-gatersleben.de
BMC Bioinformatics 2006, 7:109 doi:10.1186/1471-2105-7-109
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BioMed Central: 9 citations
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Software
Konstantinos Moutselos, Ioannis Kanaris, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos N Kolisis BMC Bioinformatics 2009, 10:324 (8 October 2009) KEGGconverter offers users a single workflow software which merges selected KGML pathway files into a fully functional metabolic network SBML model, enhanced with default kinetics, and ready for simulation purposes.
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Software
Heiko Neuweger, Marcus Persicke, Stefan P Albaum, Thomas Bekel, Michael Dondrup, Andrea T Hüser, Jörn Winnebald, Jessica Schneider, Jörn Kalinowski, Alexander Goesmann BMC Systems Biology 2009, 3:82 (23 August 2009) |
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Research article
Ana Rotter, Céline Camps, Marc Lohse, Christian Kappel, Stefania Pilati, Matjaž Hren, Mark Stitt, Pierre Coutos-Thévenot, Claudio Moser, Björn Usadel, Serge Delrot, Kristina Gruden BMC Plant Biology 2009, 9:104 (5 August 2009) Annotation of grapevine Vitis vinifera gene expression data using MapMan ontology to focus on selected metabolic pathways showed that the genes induced by powdery mildew infection encode pathogenesis related proteins and enzymes of flavonoid metabolism.
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Review
A survey of visualization tools for biological network analysis Georgios A Pavlopoulos, Anna-Lynn Wegener, Reinhard Schneider BioData Mining 2008, 1:12 (28 November 2008) |
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Research article
Visualizing regulatory interactions in metabolic networks Stephan Noack, Aljoscha Wahl, Ermir Qeli, Wolfgang Wiechert BMC Biology 2007, 5:46 (16 October 2007) |
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Research
Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species Ana Rotter, Björn Usadel, Špela Baebler, Mark Stitt, Kristina Gruden Plant Methods 2007, 3:10 (4 September 2007) |
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Software
Metabolic network visualization eliminating node redundance and preserving metabolic pathways Romain Bourqui, Ludovic Cottret, Vincent Lacroix, David Auber, Patrick Mary, Marie-France Sagot, Fabien Jourdan BMC Systems Biology 2007, 1:29 (3 July 2007) |
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Software
Björn Usadel, Axel Nagel, Dirk Steinhauser, Yves Gibon, Oliver E Bläsing, Henning Redestig, Nese Sreenivasulu, Leonard Krall, Matthew A Hannah, Fabien Poree, Alisdair R Fernie, Mark Stitt BMC Bioinformatics 2006, 7:535 (18 December 2006) |
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Software
Meta-All: a system for managing metabolic pathway information Stephan Weise, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz, Falk Schreiber, Björn H Junker BMC Bioinformatics 2006, 7:465 (23 October 2006) |