BMC Bioinformatics

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This article is part of the supplement: Italian Society of Bioinformatics (BITS): Annual Meeting 2005

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HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms

Maria Persico, Arnaud Ceol, Caius Gavrila, Robert Hoffmann, Arnaldo Florio and Gianni Cesareni*

BMC Bioinformatics 2005, 6(Suppl 4):S21 doi:10.1186/1471-2105-6-S4-S21

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Bio::Homology::InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping

Giuseppe Gallone, T Ian Simpson, J Douglas Armstrong, Andrew P Jarman BMC Bioinformatics 2011, 12:289 (18 July 2011)

Research article   Open Access

Evidence for the additions of clustered interacting nodes during the evolution of protein interaction networks from network motifs

Zhongyang Liu, Qijun Liu, Hanchang Sun, Lin Hou, Hao Guo, Yunping Zhu, Dong Li, Fuchu He BMC Evolutionary Biology 2011, 11:133 (20 May 2011)

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Building and analyzing protein interactome networks by cross-species comparisons

Amy M Wiles, Mark Doderer, Jianhua Ruan, Ting-Ting Gu, Dashnamoorthy Ravi, Barron Blackman, Alexander JR Bishop BMC Systems Biology 2010, 4:36 (30 March 2010)

Research   Open Access

Ortholog-based protein-protein interaction prediction and its application to inter-species interactions

Sheng-An Lee, Cheng-hsiung Chan, Chi-Hung Tsai, Jin-Mei Lai, Feng-Sheng Wang, Cheng-Yan Kao, Chi-Ying F Huang BMC Bioinformatics 2008, 9(Suppl 12):S11 (12 December 2008)

Research article   Open Access

Prediction of evolutionarily conserved interologs in Mus musculus

Sailu Yellaboina, Dawood B Dudekula, Minoru SH Ko BMC Genomics 2008, 9:465 (8 October 2008)

Database   Open Access

DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions

Jingkai Yu, Svetlana Pacifico, Guozhen Liu, Russell L Finley BMC Genomics 2008, 9:461 (7 October 2008)

Research   Open Access

Overview of the protein-protein interaction annotation extraction task of BioCreative II

Martin Krallinger, Florian Leitner, Carlos Rodriguez-Penagos, Alfonso Valencia Genome Biology 2008, 9(Suppl 2):S4 (1 September 2008)

Research Article   Open Access

Combining Evidence, Specificity, and Proximity towards the Normalization of Gene Ontology Terms in Text

S Gaudan, A Jimeno Yepes, V Lee, D Rebholz-Schuhmann EURASIP Journal on Bioinformatics and Systems Biology 2008, 2008:342746 (3 March 2008)

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A domain-based approach to predict protein-protein interactions

Mudita Singhal, Haluk Resat BMC Bioinformatics 2007, 8:199 (13 June 2007)

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Unequal evolutionary conservation of human protein interactions in interologous networks

Kevin R Brown, Igor Jurisica Genome Biology 2007, 8:R95 (29 May 2007)

The conservation of protein-protein interaction networks can be examined by mapping human proteins to yeast and other model organisms, revealing that protein complexes are preferentially conserved, and that such conservation can yield biological insights.

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Reconstruction of human protein interolog network using evolutionary conserved network

Tao-Wei Huang, Chung-Yen Lin, Cheng-Yan Kao BMC Bioinformatics 2007, 8:152 (10 May 2007)

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Parameter estimate of signal transduction pathways

Ivan Arisi, Antonino Cattaneo, Vittorio Rosato BMC Neuroscience 2006, 7(Suppl 1):S6 (30 October 2006)

Introduction   Open Access

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society

Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone BMC Bioinformatics 2005, 6(Suppl 4):S1 (1 December 2005)