Table 2 |
||||
|
Performance and configurations of all the evaluations in the protein/gene name recognition task |
||||
|
Modules |
Closed-1 |
Closed-2 |
Closed-3 |
Open-1 |
|
|
||||
|
SVM |
Surface word, orthographic feature, morphological pattern, trigger word |
|||
|
GENIA-POS |
Refined-BioCreative-POS |
Refined-BioCreative-POS |
Refined-BioCreative-POS |
|
|
|
||||
|
DHMM1 |
Surface word, orthographic feature |
|||
|
GENIA-POS |
Refined-BioCreative-POS |
Refined- BioCreative-POS |
Refined-BioCreative-POS |
|
|
|
||||
|
DHMM2 |
Surface word, orthographic feature, BioCreative-POS |
|||
|
|
||||
|
Ensemble |
Majority Voting |
|||
|
|
||||
|
Abbreviation Resolution |
Abbreviation Resolution based on the parentheses structure |
|||
|
|
||||
|
Name Refinement |
N/A |
N/A |
YES |
N/A |
|
|
||||
|
Dictionary Matching |
Closed Dictionary |
Closed Dictionary |
Closed Dictionary |
Open Dictionary |
|
|
||||
|
Overall Performance |
P79.97 |
P80.46 |
P82.00 |
P75.10 |
|
R80.50 |
R80.80 |
R83.17 |
R81.26 |
|
|
F80.23 |
F80.63(+0.40) |
F82.58(+2.35) |
F78.06(-4.52) |
|
|
|
||||
|
Zhou et al. BMC Bioinformatics 2005 6(Suppl 1):S7 doi:10.1186/1471-2105-6-S1-S7 |
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