Table 2

Performance and configurations of all the evaluations in the protein/gene name recognition task

Modules

Closed-1

Closed-2

Closed-3

Open-1


SVM

Surface word, orthographic feature, morphological pattern, trigger word

GENIA-POS

Refined-BioCreative-POS

Refined-BioCreative-POS

Refined-BioCreative-POS


DHMM1

Surface word, orthographic feature

GENIA-POS

Refined-BioCreative-POS

Refined- BioCreative-POS

Refined-BioCreative-POS


DHMM2

Surface word, orthographic feature, BioCreative-POS


Ensemble

Majority Voting


Abbreviation Resolution

Abbreviation Resolution based on the parentheses structure


Name Refinement

N/A

N/A

YES

N/A


Dictionary Matching

Closed Dictionary

Closed Dictionary

Closed Dictionary

Open Dictionary


Overall Performance

P79.97

P80.46

P82.00

P75.10

R80.50

R80.80

R83.17

R81.26

F80.23

F80.63(+0.40)

F82.58(+2.35)

F78.06(-4.52)


Zhou et al. BMC Bioinformatics 2005 6(Suppl 1):S7   doi:10.1186/1471-2105-6-S1-S7

Open Data