Table 1

Results in BioCreAtIvE Task 1B: Our results compared to results with highest overall F-measure. For mouse and fly the highest F-measure is achieved by ProMiner. Our yeast result was obtained by exact matching of the curated list, no post filter was applied. Mouse(1) is the exact search with the curated list. Mouse(2) was additionally filtered with the rule-based post filter. Our fly results were obtained as post-evaluation by exact matching of the curated list and application of the SVM-based post filter.

Yeast

Yeast max.

Mouse (1)

Mouse (2)

Mouse max.

Fly (post-eval.)

Fly max.


F-measure

0.897

0.921

0.764

0.773

0.790

0.768

0.815

Precision

0.917

0.950

0.735

0.764

0.766

0.802

0.831

Recall

0.878

0.894

0.796

0.781

0.814

0.737

0.800


TP

538

548

433

425

443

316

343

FP

49

29

156

131

135

78

70

FN

75

65

111

119

101

113

86


Fundel et al. BMC Bioinformatics 2005 6(Suppl 1):S15   doi:10.1186/1471-2105-6-S1-S15

Open Data