Table 1

Results of the BioCreative competition. Summary of submitted search runs. The table contains details of parameter sets (D# denotes disambiguation threshold, O(+/-) use of organism disambiguation, S(+/-) significance of dash at end of synonym) and resulting performance. Values where ProMiner achieved the best rank of all participants are printed in bold.

Fly

Mouse

Yeast

1

2

3

1

2

3

1

2


Disambiguation (D#)

D3

D1

D3

D3

D1

D5

D3

D1

Organism O(+/-)

O+

O+

O+

O-

O+

O-

O-

O-

Dash significance S(+/-)

S-

S+

S+

S-

S+

S+

S-

S-

F-measure

0.781

0.816

0.787

0.771

0.776

0.79

0.897

0.899

Precision

0.728

0.831

0.744

0.752

0.809

0.766

0.951

0.966

Recall

0.841

0.8

0.834

0.79

0.746

0.814

0.848

0.84


Hanisch et al. BMC Bioinformatics 2005 6(Suppl 1):S14   doi:10.1186/1471-2105-6-S1-S14

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