This article is part of the supplement: A critical assessment of text mining methods in molecular biology
Overview of BioCreAtIvE: critical assessment of information extraction for biology
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* Corresponding author: Lynette Hirschman lynette@mitre.org
BMC Bioinformatics 2005, 6(Suppl 1):S1 doi:10.1186/1471-2105-6-S1-S1
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Software
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Proceedings
Comparison of concept recognizers for building the Open Biomedical Annotator Nigam H Shah, Nipun Bhatia, Clement Jonquet, Daniel Rubin, Annie P Chiang, Mark A Musen BMC Bioinformatics 2009, 10(Suppl 9):S14 (17 September 2009) |
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Distinguishing the species of biomedical named entities for term identification Xinglong Wang, Michael Matthews BMC Bioinformatics 2008, 9(Suppl 11):S6 (19 November 2008) |
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Alaa Abi-Haidar, Jasleen Kaur, Ana Maguitman, Predrag Radivojac, Andreas Rechtsteiner, Karin Verspoor, Zhiping Wang, Luis M Rocha Genome Biology 2008, 9(Suppl 2):S11 (1 September 2008) |
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Research
Martin Krallinger, Alexander Morgan, Larry Smith, Florian Leitner, Lorraine Tanabe, John Wilbur, Lynette Hirschman, Alfonso Valencia Genome Biology 2008, 9(Suppl 2):S1 (1 September 2008) |
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Proceedings
Integrating protein-protein interactions and text mining for protein function prediction Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich Rebholz-Schuhmann BMC Bioinformatics 2008, 9(Suppl 8):S2 (22 July 2008) |
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Methodology article
Laura I Furlong, Holger Dach, Martin Hofmann-Apitius, Ferran Sanz BMC Bioinformatics 2008, 9:84 (5 February 2008) |
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Proceedings
Padmini Srinivasan, Xin Ying Qiu BMC Bioinformatics 2007, 8(Suppl 9):S3 (27 November 2007) |
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Methodology article
Automatic reconstruction of a bacterial regulatory network using Natural Language Processing Carlos Rodríguez-Penagos, Heladia Salgado, Irma Martínez-Flores, Julio Collado-Vides BMC Bioinformatics 2007, 8:293 (7 August 2007) |
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Software
GOAnnotator: linking protein GO annotations to evidence text Francisco M Couto, Mário J Silva, Vivian Lee, Emily Dimmer, Evelyn Camon, Rolf Apweiler, Harald Kirsch, Dietrich Rebholz-Schuhmann Journal of Biomedical Discovery and Collaboration 2006, 1:19 (20 December 2006) |
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Introduction
Proceedings of the Second International Symposium for Semantic Mining in Biomedicine Sophia Ananiadou, Juliane Fluck BMC Bioinformatics 2006, 7(Suppl 3):S1 (24 November 2006) |
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Methodology article
A graph-search framework for associating gene identifiers with documents William W Cohen, Einat Minkov BMC Bioinformatics 2006, 7:440 (10 October 2006) |
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Research article
Gene and protein nomenclature in public databases Katrin Fundel, Ralf Zimmer BMC Bioinformatics 2006, 7:372 (9 August 2006) |
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Research article
Aditya K Sehgal, Padmini Srinivasan BMC Bioinformatics 2006, 7:220 (21 April 2006) |
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Research
The TREC 2004 genomics track categorization task: classifying full text biomedical documents Aaron M Cohen, William R Hersh Journal of Biomedical Discovery and Collaboration 2006, 1:4 (14 March 2006) |
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Enhancing access to the Bibliome: the TREC 2004 Genomics Track William R Hersh, Ravi Bhupatiraju, Laura Ross, Phoebe Roberts, Aaron M Cohen, Dale F Kraemer Journal of Biomedical Discovery and Collaboration 2006, 1:3 (13 March 2006) |
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Research article
Identifying biological concepts from a protein-related corpus with a probabilistic topic model Bin Zheng, David C McLean, Xinghua Lu BMC Bioinformatics 2006, 7:58 (8 February 2006) |
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Review
Text-mining and information-retrieval services for molecular biology Martin Krallinger, Alfonso Valencia Genome Biology 2005, 6:224 (28 June 2005) A range of text-mining applications have been developed recently that will improve access to knowledge for biologists and database annotators. |
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Editorial
BMC Bioinformatics comes of age Matthew J Cockerill BMC Bioinformatics 2005, 6:140 (7 June 2005) Almost exactly 5 years ago, in early June 2000, BMC Bioinformatics received its first submission. Five years on, it has received over a thousand submissions, and the journal is continuing to grow rapidly.
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