Table 1

Hypothesis testing results

Probe

Mean (group1, Raw data)

Mean (group2, Raw data)

Fold change

t (Equal variance t-test)

p-value (Equal variance t-test)

PTP, unrestricted (Equal variance t-test)


AFFX-MurIL2_at

105.16

200.34

1.905097

-0.81193

0.440318

0.226179


AFFX-MurIL10_at

176.52

253.58

1.436551

-0.49777

0.632041

0.194216


AFFX-MurIL4_at

146.56

197.86

1.350027

-0.05477

0.957668

0.147303


AFFX-MurFAS_at

670.06

487.42

0.727427

2.264698

0.05333

0.32061


AFFX-BioB-5_at

4074.98

5165.36

1.267579

-1.10225

0.302405

0.251946


AFFX-BioB-M_at

10258.4

12376.04

1.20643

-0.85246

0.418745

0.230018


AFFX-BioB-3_at

5600.76

6784.9

1.211425

-0.82656

0.432446

0.227573


AFFX-BioC-5_at

15688.4

17406.88

1.109538

-0.23558

0.819676

0.16602


AFFX-BioC-3_at

11812.54

13288.74

1.124969

-0.2571

0.803593

0.168321


AFFX-BioDn-3_at

65025.2

68451.72

1.052695

0.467328

0.65273

0.190965


AFFX-CreX-5_at

124944.9

152682.8

1.222001

-0.39488

0.70325

0.183174


AFFX-CreX-3_at

166352

192790.6

1.158932

-0.26323

0.799024

0.168979


AFFX-BioB-5_st

611.6

677.8

1.108241

0.280987

0.785851

0.170886


AFFX-BioB-M_st

556.26

779.84

1.401934

-1.1822

0.27107

0.25832


AFFX-BioB-3_st

195.62

359.32

1.836827

-1.51174

0.169049

0.281499

AFFX-BioC-5_st

114.36

183.8

1.607205

-2.17372

0.061461

0.316596


AFFX-BioC-3_st

57.36

94.86

1.653766

-0.62822

0.547374

0.2079


AFFX-BioDn-5_st

1981.88

2327.5

1.17439

-0.99146

0.350498

0.242595


AFFX-BioDn-3_st

1487.74

2265.06

1.522484

-2.01951

0.078118

0.309434


AFFX-CreX-5_st

950.56

1221.04

1.284548

-1.42444

0.192137

0.275814


AFFX-CreX-3_st

2610.3

3429.5

1.313834

-1.21894

0.257585

0.261147


AFFX-DapX-5_at

204.42

267.12

1.306721

0.187522

0.85592

0.16092


AFFX-DapX-M_at

299.3

347.62

1.161443

0.119799

0.907597

0.153866


AFFX-DapX-3_at

192.64

95.82

0.497404

1.5611

0.157123

0.284581


AFFX-LysX-5_at

132.46

115.9

0.874981

0.445594

0.667702

0.188634


AFFX-LysX-M_at

174.16

204.14

1.172141

-0.09641

0.92557

0.151477


AFFX-LysX-3_at

47.8

167.94

3.513389

-1.2216

0.256632

0.261348


AFFX-PheX-5_at

33.04

55.5

1.679782

-2.04285

0.07534

0.310549


AFFX-PheX-M_at

40.64

29.66

0.729823

1.223746

0.255865

0.261511


AFFX-PheX-3_at

497.66

217.12

0.436282

2.826877

0.022257

0.342932


AFFX-ThrX-5_at

92.06

184.74

2.006735

-0.26462

0.797994

0.169127


AFFX-ThrX-M_at

225.32

272.46

1.209214

-0.33299

0.747704

0.17649


AFFX-ThrX-3_at

114.54

95.08

0.830103

-0.17193

0.86776

0.15928


AFFX-TrpnX-5_at

73

96.68

1.324384

-0.82529

0.433126

0.227452


AFFX-TrpnX-M_at

30.12

37.74

1.252988

-0.31889

0.757976

0.174969



Trivedi et al. BMC Bioinformatics 2005 6:86   doi:10.1186/1471-2105-6-86

Open Data