Resolution:
## Figure 2.
Dynamic programming table traversal. The multiple alignment prefixes (represented by o symbols) traversed by the one-state
recursion, when the input is the homology structure of Fig. 1. (For clarity, the vectors
are plotted in two dimensions instead of the actual three.) The homology structure
is represented by the graph, and each directed path on this graph uniquely corresponds
to an alignment that is compatible with the homology structure.
Lunter |