Bayesian coestimation of phylogeny and sequence alignment

doi:10.1186/1471-2105-6-83

BMC Bioinformatics

Volume 6

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Methodology article

Bayesian coestimation of phylogeny and sequence alignment

Gerton Lunter¹ , István Miklós² , Alexei Drummond³ , Jens Ledet Jensen⁴ and Jotun Hein¹

¹Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK

²MTA-ELTE Theoretical Biology and Ecology Group, Pázmány Péter sétány 1/c 1117 Budapest, Hungary

³Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK

⁴Department of Mathematical Sciences, University of Aarhus, Ny Munkegade, Building 530, DK-8000 Aarhus C, Denmark

author email corresponding author email

BMC Bioinformatics 2005, 6:83doi:10.1186/1471-2105-6-83


Published:	1 April 2005

Additional files

Additional File 1:

This XML file specifies the MCMC run for the example phylogeny and alignment co-estimation given in this paper (see Figs. 4, 5, 6). To run, download the BEAST package (AJ Drummond and A Rambaut, http://evolve.zoo.ox.ac.uk/beast webcite.)

Format: XML Size: 10KB Download file