BMC Bioinformatics

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MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes

Voichita D Marinescu, Isaac S Kohane and Alberto Riva*

BMC Bioinformatics 2005, 6:79 doi:10.1186/1471-2105-6-79

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Research   Open Access

Identification of functionally related genes using data mining and data integration: a breast cancer case study

Ettore Mosca, Gloria Bertoli, Eleonora Piscitelli, Laura Vilardo, Rolland A Reinbold, Ileana Zucchi, Luciano Milanesi BMC Bioinformatics 2009, 10(Suppl 12):S8 (15 October 2009)

Research article   Open Access

Gene expression patterns in heterozygous Plk4 murine embryonic fibroblasts

Alan Morettin, Alejandra Ward, Jordan Nantais, John W Hudson BMC Genomics 2009, 10:319 (16 July 2009)

Research article   Open Access

The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes

Todd Riley, Xin Yu, Eduardo Sontag, Arnold Levine BMC Bioinformatics 2009, 10:111 (20 April 2009)

Research article   Open Access Highly Accessed

New scoring schema for finding motifs in DNA Sequences

Fatemeh Zare-Mirakabad, Hayedeh Ahrabian, Mehdei Sadeghi, Abbas Nowzari-Dalini, Bahram Goliaei BMC Bioinformatics 2009, 10:93 (20 March 2009)

Software   Open Access Highly Accessed

ReXSpecies – a tool for the analysis of the evolution of gene regulation across species

Stephan Struckmann, Marcos J Araúzo-Bravo, Hans R Schöler, Rolland A Reinbold, Georg Fuellen BMC Evolutionary Biology 2008, 8:111 (14 April 2008)

Research   Open Access

Age-related subproteomic analysis of mouse liver and kidney peroxisomes

Jia Mi, Itsaso Garcia-Arcos, Ruben Alvarez, Susana Cristobal Proteome Science 2007, 5:19 (27 November 2007)

Research   Open Access

Xenobiotic metabolizing enzyme gene polymorphisms predict response to lung volume reduction surgery

Craig P Hersh, Dawn L DeMeo, John J Reilly, Edwin K Silverman Respiratory Research 2007, 8:59 (8 August 2007)

Research   Open Access

In silico modelling of hormone response elements

Maria Stepanova, Feng Lin, Valerie Lin BMC Bioinformatics 2006, 7(Suppl 4):S27 (12 December 2006)

Software   Open Access

Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration

Erdahl T Teber, Edward Crawford, Kent B Bolton, Derek Van Dyk, Peter R Schofield, Vimal Kapoor, W Bret Church BMC Bioinformatics 2006, 7:33 (23 January 2006)