Cyclic nucleotide binding proteins in the Arabidopsis thaliana and Oryza sativa genomes

Additional File 5:

Co-ordinate file of model generated for Figure 1b.

Format: PDB Size: 51KB Download file

Additional File 1:

Phylogenetic analysis of CNGC and shaker-type channels from Arabidopsis thaliana and Oryza sativa. Un-rooted neighbor-joining trees were constructed for (A) shaker-type and (B) CNGC channels using full-length sequences. For the shaker-type channels, numbers at nodes indicate number of trees out of 100 in which the node occurred. These are omitted in (B) for clarity. Scale indicates number of differences per residue. Trees were generated using ClustalX [65] and visualized with TreeView [68].

Format: TIFF Size: 485KB Download file

Additional File 4:

Relevant Sequence Alignments Protein sequence alignments upon which phylogenetic analyses in Figure 2, and 2 are based.

Format: RTF Size: 1.4MB Download file

Additional File 2:

Cyclic nucleotide binding proteins in Arabidopsis thaliana and Oryza sativa. Proteins containing CNB domains including species, name, aliases, accession number, other domains present (AR indicates ankyrin repeat, CaM indicates calmodulin binding domain and TE indicates type II acyl CoA thioesterase domain), sequence length, residues encompassing the CNB domain and E-value for the CNB domain as determined by SMART [62]. All accession numbers are from NCBI except osCNGC5b, osCNGC5c and osCNGC18 which were obtained from the MIPS Oryza sativa database http://mips.gsf.de/proj/plant/jsf/rice/index.jsp webcite.

Format: DOC Size: 121KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional File 3:

Protein sequences of all sequences analysed in this manuscript. Sequences are named according to details in the text and are in FASTA format.

Format: TXT Size: 42KB Download file