BMC Bioinformatics

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Open Access

Cyclic nucleotide binding proteins in the Arabidopsis thaliana and Oryza sativa genomes

Dave Bridges, Marie E Fraser and Greg BG Moorhead*

BMC Bioinformatics 2005, 6:6 doi:10.1186/1471-2105-6-6

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Research   Open Access

Prior knowledge based mining functional modules from Yeast PPI networks with gene ontology

Liping Jing, Michael K Ng BMC Bioinformatics 2010, 11(Suppl 11):S3 (14 December 2010)

Research article   Open Access

The Average Mutual Information Profile as a Genomic Signature

Mark Bauer, Sheldon M Schuster, Khalid Sayood BMC Bioinformatics 2008, 9:48 (25 January 2008)

A new kind of genomic signature, based on average mutual information profiles, offers species-specific signatures derived from a phylogenetically informative genomic distance measure and can use short sequences while being computationally simple to calculate.

Research   Open Access Highly Accessed

Evolution of allostery in the cyclic nucleotide binding module

Natarajan Kannan, Jian Wu, Ganesh S Anand, Shibu Yooseph, Andrew F Neuwald, J Craig Venter, Susan S Taylor Genome Biology 2007, 8:R264 (12 December 2007)

Analysis of cyclic nucleotide binding (CNB) domains shows that they have evolved to sense a wide variety of second messenger signals; a mechanism for allosteric regulation by CNB domains is proposed.