Proceedings  

Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets

Sujoy Roy, Kevin Heinrich, Vinhthuy Phan, Michael W Berry, Ramin Homayouni BMC Bioinformatics 2011, 12(Suppl 10):S19 (18 October 2011)

Abstract | Full text | PDF | PubMed

Proceedings  

Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization)

Elina Tjioe, Michael W Berry, Ramin Homayouni BMC Bioinformatics 2010, 11(Suppl 6):S14 (7 October 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Review  

Linking genes to literature: text mining, information extraction, and retrieval applications for biology

Martin Krallinger, Alfonso Valencia, Lynette Hirschman Genome Biology 2008, 9(Suppl 2):S8 (1 September 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Software  

GenCLiP: a software program for clustering gene lists by literature profiling and constructing gene co-occurrence networks related to custom keywords

Zhong-Xi Huang, Hui-Yong Tian, Zhen-Fu Hu, Yi-Bo Zhou, Jin Zhao, Kai-Tai Yao BMC Bioinformatics 2008, 9:308 (13 July 2008)

Abstract | Full text | PDF | PubMed

Research article  

Improving protein function prediction methods with integrated literature data

Aaron P Gabow, Sonia M Leach, William A Baumgartner, Lawrence E Hunter, Debra S Goldberg BMC Bioinformatics 2008, 9:198 (15 April 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Software  

Literature Lab: a method of automated literature interrogation to infer biology from microarray analysis

Phillip G Febbo, Mike G Mulligan, David A Slonina, Kimberly Stegmaier, Dolores Di Vizio, Paul R Martinez, Massimo Loda, Stephen C Taylor BMC Genomics 2007, 8:461 (18 December 2007)

Abstract | Full text | PDF | PubMed

Research article  

Gene regulatory networks in lactation: identification of global principles using bioinformatics

Danielle G Lemay, Margaret C Neville, Michael C Rudolph, Katherine S Pollard, J German BMC Systems Biology 2007, 1:56 (27 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Software  

Storing, linking, and mining microarray databases using SRS

Antoine Veldhoven, Don de Lange, Marcel Smid, Victor de Jager, Jan A Kors, Guido Jenster BMC Bioinformatics 2005, 6:192 (27 July 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central