Table 3 |
||||
|
SigPath benchmark measurement summary. |
||||
|
Minimum of four measurements |
||||
|
|
||||
|
FO Min |
KODO Min |
Δ (KODO – FO) |
%(FO/KODO) Min |
|
|
|
||||
|
Junit Tests |
7809 |
14962 |
7153 |
52.19% |
|
Boot |
3026 |
3976 |
950 |
76.11% |
|
SM Import |
399189 |
409452 |
10263 |
97.49% |
|
FullTextIndexer1 |
566858 |
1804663 |
1237805 |
31.41% |
|
mam.xml |
58999 |
299876 |
240877 |
19.67% |
|
rod.xml |
95680 |
422423 |
326743 |
22.65% |
|
hum.xml |
144250 |
692476 |
548226 |
20.83% |
|
inv.xml |
430107 |
1895850 |
1465743 |
22.69% |
|
vrt.xml |
97662 |
471683 |
374021 |
20.71% |
|
sprot41_1.xml |
332552 |
1763561 |
1431009 |
18.86% |
|
sprot41_2.xml |
441054 |
1966868 |
1525814 |
22.42% |
|
FullText Indexer2 |
2655170 |
7521535 |
4866365 |
35.30% |
|
hum.xml |
144250 |
692476 |
548226 |
20.83% |
|
XML Import |
15859 |
25441 |
9582 |
62.34% |
|
TestGetPathways |
19658 |
21769 |
2111 |
90.30% |
|
TestBenchmark |
6840592 |
13531171 |
6690579 |
50.55% |
|
Totals (ms) |
12229818 |
30934447 |
18704629 |
39.53% |
|
Average of four measurements |
||||
|
|
||||
|
FO Avg |
KODO Avg |
%(FO/KODO) Avg |
FO/KODO CV |
|
|
|
||||
|
Junit Tests |
7875 |
15414 |
51.11% |
2 |
|
Boot |
3064 |
4319 |
71.67% |
12 |
|
SM Import |
402303 |
413655 |
97.26% |
1 |
|
FullText Indexer1 |
572934 |
1818548 |
31.51% |
1 |
|
mam.xml |
59745 |
303455 |
19.69% |
3 |
|
rod.xml |
98938 |
429661 |
23.02% |
3 |
|
hum.xml |
152827 |
698456 |
21.89% |
5 |
|
inv.xml |
434253 |
1915082 |
22.68% |
1 |
|
vrt.xml |
100248 |
476812 |
21.03% |
4 |
|
sprot41_1.xml |
351278 |
1780467 |
19.72% |
9 |
|
sprot41_2.xml |
473765 |
1981667 |
23.90% |
11 |
|
FullText Indexer2 |
2765967 |
7590177 |
36.43% |
4 |
|
XML Import |
16804 |
39913 |
45.44% |
36 |
|
TestGetPathways |
20388 |
24362 |
84.19% |
10 |
|
TestBenchmark |
6886598 |
13736330 |
50.16% |
3 |
|
Totals (ms) |
12346986 |
31228318 |
39.54% |
|
|
|
||||
|
Srdanovic et al. BMC Bioinformatics 2005 6:5 doi:10.1186/1471-2105-6-5 |
||||
