|
Default values for the parameters used in the program |
||
| Defects |
Parameter |
Value |
|
|
||
| Extended |
Radius of the median filter |
10 pixels |
| Threshold for the proportion of variance explained by the Background |
30% |
|
| Compact |
Quantile for the definition of outliers |
5th, two tails |
| Minimum size of clusters |
15 pixels |
|
| Connectivity definition |
8-neighbours |
|
| Probability value |
0.01 |
|
| Diffuse |
Threshold for bright defects |
40% more than original value |
| Threshold for dark defects |
35% more than original value |
|
| p-value threshold for binomial test. |
0.001 |
|
| Radius of sliding window |
10 pixels |
|
| Connectivity definition |
8-neighbours |
|
| Minimum size of clusters |
3π*diff. radius |
|
Suárez-Fariñas et al. BMC Bioinformatics 2005 6:294 doi:10.1186/1471-2105-6-294 |
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