Table 1

Default values for the parameters used in the program

Defects

Parameter

Value


Extended

Radius of the median filter

10 pixels

Threshold for the proportion of variance explained by the Background

30%

Compact

Quantile for the definition of outliers

5th, two tails

Minimum size of clusters

15 pixels

Connectivity definition

8-neighbours

Probability value

0.01

Diffuse

Threshold for bright defects

40% more than original value

Threshold for dark defects

35% more than original value

p-value threshold for binomial test.

0.001

Radius of sliding window

10 pixels

Connectivity definition

8-neighbours

Minimum size of clusters

3π*diff. radius


Suárez-Fariñas et al. BMC Bioinformatics 2005 6:294   doi:10.1186/1471-2105-6-294

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