Table 1 |
||
|
Default values for the parameters used in the program |
||
|
Defects |
Parameter |
Value |
|
|
||
|
Extended |
Radius of the median filter |
10 pixels |
|
Threshold for the proportion of variance explained by the Background |
30% |
|
|
Compact |
Quantile for the definition of outliers |
5th, two tails |
|
Minimum size of clusters |
15 pixels |
|
|
Connectivity definition |
8-neighbours |
|
|
Probability value |
0.01 |
|
|
Diffuse |
Threshold for bright defects |
40% more than original value |
|
Threshold for dark defects |
35% more than original value |
|
|
p-value threshold for binomial test. |
0.001 |
|
|
Radius of sliding window |
10 pixels |
|
|
Connectivity definition |
8-neighbours |
|
|
Minimum size of clusters |
3π*diff. radius |
|
|
|
||
|
Suárez-Fariñas et al. BMC Bioinformatics 2005 6:294 doi:10.1186/1471-2105-6-294 |
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