Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process

doi:10.1186/1471-2105-6-285

BMC Bioinformatics

Volume 6

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Wolski WE
Lalowski M
Martus P
Herwig R
Giavalisco P
Gobom J
Sickmann A
Lehrach H
Reinert K

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Lalowski M
Martus P
Herwig R
Giavalisco P
Gobom J
Sickmann A
Lehrach H
Reinert K
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Methodology article

Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process

Witold E Wolski¹^,7 , Maciej Lalowski⁴^* , Peter Martus⁶^* , Ralf Herwig¹^* , Patrick Giavalisco⁵ , Johan Gobom¹ , Albert Sickmann³ , Hans Lehrach¹ and Knut Reinert²^*

¹Max Planck Institute for Molecular Genetics, Ihnestraβe 63-73, D-14195 Berlin, Germany

²Institute for Computer Science, Free University Berlin, Takustr. 9, D-14195 Berlin, Germany

³DFG Research Center for Experimental Biomedicine, University of Würzburg, Versbacherstr. 9, D-97078 Würzburg, Germany

⁴Max Delbrück Center for Molecular Medicine, Robert-Roessle-Str. 10, D-13125 Berlin-Buch, Germany

⁵Boyce Thompson Institute for Plant Research, Tower Road, Ithaca 14850, NY, USA

⁶Institute for Medical Informatics, Biometry and Epidemiology; Charite University Medicine Berlin, Hindenburgdamm 30 (HBD 30), 12200 Berlin

⁷School of Mathematics and Statistics, Merz Court, University of Newcastle upon Tyne, NE1 7RU, UK

author email corresponding author email* Contributed equally

BMC Bioinformatics 2005, 6:285doi:10.1186/1471-2105-6-285


Published:	30 November 2005

Additional files

Additional File 1:

Column name and factor level definition of the following four tables.

Format: TXT Size: 1KB Download file

Additional File 2:

The file contains the sensitivity and specificity PAUC obtained for peak-list comparison approaches based on binary measure and the PMF dataset.

Format: CSV Size: 4KB Download file

Additional File 3:

The file contains the sensitivity and specificity PAUC obtained for peak-list comparison approaches based on measures considering peak intensities and the PMF dataset.

Format: CSV Size: 228KB Download file

Additional File 4:

The file contains the sensitivity and specificity PAUC obtained for peak-list comparison approaches based on the binary measure based and the MS/MS dataset.

Format: CSV Size: 4KB Download file

Additional File 5:

The file contains the sensitivity and specificity PAUC obtained for peak-list comparison approaches based on measures considering peak intensities and the MS/MS dataset.

Format: CSV Size: 229KB Download file