|
Benchmark comparison of ASPIC with other similar tools |
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| ASPIC |
ASAP |
ASD |
ACEVIEW |
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|
|
|
|
|
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| GENE |
#introns (#novel) |
#TS |
#EST/splice |
#introns (#ASPIC) |
#TS |
#introns (#ASPIC) |
#TS |
#introns (#ASPIC) |
#TS |
|
|
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| ABCB10 |
12(0) |
2 |
12.42 |
12(12) |
1 |
Not Found |
13(12) |
3 |
|
| ACADM |
21(1) |
15 |
31.52 |
15(14) |
6 |
Not Found |
22(20) |
14 |
|
| ACTN2 |
23(0) |
28 |
19.09 |
20(20) |
1 |
22(22) |
4 |
23(23) |
8 |
| ADAM15 |
41(4) |
67 |
40.07 |
13(13) |
4 |
29(29) |
11 |
56(37) |
25 |
| ADAMTS4 |
8(0) |
3 |
8.63 |
7(7) |
1 |
8(8) |
4 |
8(8) |
3 |
| ADORA1 |
13(1) |
10 |
4.69 |
8(8) |
4 |
12(12) |
9 |
10(9) |
7 |
| ADORA3 |
15(13) |
5 |
6.13 |
2(2) |
2 |
Not Found |
3(2) |
3 |
|
| AGL |
40(1) |
12 |
14.48 |
38(38) |
1 |
Not Found |
39(39) |
10 |
|
| AGRN |
41(4) |
21 |
16.98 |
35(32) |
1 |
Not Found |
45(37) |
11 |
|
| AGT |
7(2) |
17 |
52.86 |
4(3) |
1 |
Not Found |
9(5) |
8 |
|
| AHCYL1 |
26(4) |
35 |
48.50 |
19(19) |
5 |
19(19) |
4 |
26(22) |
13 |
| AKR7A2 |
9(1) |
6 |
73.33 |
6(6) |
1 |
7(7) |
2 |
31(8) |
15 |
| ALDH9A1 |
17(4) |
10 |
39.29 |
11(11) |
2 |
Not Found |
16(13) |
7 |
|
| ALPL |
15(0) |
8 |
19.47 |
14(13) |
3 |
13(13) |
3 |
17(15) |
9 |
| AMPD1 |
14(0) |
4 |
7.64 |
13(13) |
1 |
Not Found |
45(14) |
12 |
|
| ANGPTL1 |
6(0) |
3 |
10.50 |
5(5) |
1 |
Not Found |
6(6) |
4 |
|
| ANGPTL3 |
6(0) |
5 |
19.17 |
6(6) |
2 |
Not Found |
8(6) |
7 |
|
| ANXA9 |
15(1) |
3 |
14.40 |
13(13) |
1 |
14(13) |
2 |
16(14) |
6 |
| AP4B1 |
18(0) |
22 |
14.61 |
12(12) |
1 |
17(16) |
12 |
16(16) |
14 |
| APCS |
2(1) |
5 |
62.50 |
1(1) |
1 |
Not Found |
1(1) |
1 |
|
| ARHGEF2 |
32(1) |
37 |
15.19 |
22(22) |
3 |
26(25) |
6 |
35(31) |
17 |
| ARHGEF11 |
47(1) |
9 |
7.70 |
42(42) |
2 |
41(40) |
6 |
46(45) |
17 |
| ARHGEF16 |
14(2) |
12 |
18.64 |
10(10) |
1 |
Not Found |
15(12) |
5 |
|
| ARNT |
26(1) |
14 |
11.73 |
20(18) |
1 |
22(21) |
3 |
38(26) |
14 |
| ARPC5 |
4(1) |
2 |
120.75 |
3(3) |
1 |
4(2) |
2 |
6(3) |
4 |
| ARTN |
8(0) |
10 |
5.25 |
7(7) |
4 |
6(6) |
3 |
7(7) |
10 |
| ATAD3A |
22(2) |
10 |
36.41 |
16(16) |
2 |
Not Found |
58(21) |
27 |
|
| ATP1B1 |
11(2) |
12 |
59.27 |
7(7) |
1 |
10(9) |
4 |
11(8) |
10 |
| ATP2B4 |
29(3) |
11 |
8.07 |
22(22) |
5 |
23(23) |
3 |
26(26) |
14 |
| Clorf10 |
2(0) |
1 |
7.00 |
2(2) |
1 |
Not Found |
2(2) |
2 |
|
| Clorf26 |
22(0) |
7 |
7.91 |
17(17) |
1 |
Not Found |
23(22) |
6 |
|
| C1QB |
3(1) |
3 |
25.67 |
5(2) |
3 |
5(2) |
3 |
6(2) |
5 |
| CAPZA1 |
15(4) |
15 |
68.40 |
11(11) |
2 |
10(9) |
3 |
12(11) |
7 |
| CTRC |
9(1) |
4 |
36.22 |
8(8) |
1 |
Not Found |
8(7) |
3 |
|
| DMRTA2 |
2(0) |
2 |
1.00 |
1(1) |
1 |
Not Found |
2(2) |
1 |
|
| DPH2L2 |
12(1) |
11 |
31.25 |
10(10) |
7 |
12(11) |
12 |
12(11) |
14 |
| EPHA2 |
20(1) |
8 |
13.45 |
16(16) |
1 |
17(17) |
7 |
20(19) |
8 |
| EYA3 |
20(0) |
9 |
11.40 |
15(15) |
1 |
Not Found |
21(20) |
10 |
|
| FBXO2 |
9(0) |
6 |
13.67 |
9(8) |
2 |
6(5) |
3 |
9(8) |
5 |
| FCGR3B |
7(0) |
5 |
22.57 |
4(4) |
1 |
Not Found |
7(7) |
6 |
|
| FUCA1 |
11(3) |
8 |
18.00 |
8(8) |
2 |
Not Found |
7(7) |
2 |
|
| GBP2 |
17(3) |
8 |
27.82 |
12(12) |
2 |
Not Found |
26(14) |
10 |
|
| GMEB1 |
12(1) |
5 |
16.67 |
9(9) |
2 |
11(11) |
3 |
11(11) |
6 |
| HNRPR |
20(2) |
38 |
45.70 |
16(15) |
7 |
12(12) |
7 |
21(18) |
17 |
| LGALS8 |
22(2) |
25 |
16.00 |
12(11) |
4 |
13(13) |
4 |
27(19) |
21 |
| LRRN5 |
3(0) |
3 |
3.00 |
5(3) |
2 |
Not Found |
5(3) |
4 |
|
| LYPLA2 |
15(0) |
14 |
96.07 |
14(14) |
6 |
Not Found |
15(14) |
14 |
|
| MASP2 |
11(0) |
5 |
7.00 |
11(11) |
2 |
11(11) |
5 |
11(11) |
6 |
| MOV10 |
35(4) |
42 |
25.29 |
29(29) |
7 |
24(23) |
8 |
33(31) |
21 |
| NPPB |
2(0) |
1 |
30.50 |
2(2) |
1 |
Not Found |
3(2) |
3 |
|
| PAFAH2 |
18(3) |
11 |
15.06 |
12(11) |
2 |
13(13) |
5 |
16(14) |
8 |
| PALMD |
8(0) |
9 |
35.63 |
7(7) |
1 |
Not Found |
9(8) |
8 |
|
| PEX10 |
12(1) |
13 |
21.58 |
6(6) |
1 |
10(10) |
7 |
12(10) |
11 |
| PINK1 |
10(2) |
15 |
40.20 |
7(7) |
2 |
Not Found |
9(8) |
10 |
|
| PTPRU |
38(3) |
15 |
12.89 |
20(20) |
1 |
Not Found |
35(35) |
9 |
|
| RHOC |
17(3) |
5 |
8.35 |
13(2) |
7 |
15(1) |
9 |
39(14) |
31 |
| SDC3 |
6(2) |
5 |
5.33 |
4(3) |
2 |
8(4) |
5 |
9(5) |
6 |
| SDHB |
11(0) |
12 |
97.27 |
9(9) |
3 |
Not Found |
13(11) |
11 |
|
| SERPINC1 |
12(2) |
7 |
18.75 |
8(8) |
2 |
8(8) |
3 |
16(10) |
11 |
| SFPQ |
12(3) |
11 |
74.75 |
9(9) |
1 |
9(9) |
3 |
17(9) |
25 |
| TARDBP |
21(3) |
20 |
29.38 |
15(13) |
4 |
9(9) |
4 |
18(16) |
15 |
| TCN2 |
13(1) |
10 |
26.15 |
9(9) |
2 |
12(12) |
4 |
13(10) |
11 |
| TOR3A |
15(2) |
9 |
19.20 |
9(9) |
4 |
11(11) |
8 |
15(13) |
12 |
| VAMP3 |
5(0) |
3 |
80.60 |
6(5) |
2 |
6(5) |
3 |
7(5) |
10 |
| Total |
1009(94) |
11.9 |
28.3 |
753(721) |
2.3 |
495(461) |
5.1 |
1194(905) |
9.7 |
|
ASPIC results from a random sample of 64 human genes from Chromosome 1 compared to those from the ASAP, ASD and AceView resources. The first column reports the HUGO name of the examined gene. The ASPIC data include the total number of predicted introns (novel introns in brackets), the minimum number of compatible transcripts and the average number of ESTs supporting gene splices. Introns with 2 non canonical splices are accepted by ASPIC only if confirmed by at least two ESTs. For the other resources the number of predicted introns (in brackets those also predicted by ASPIC) and the minimum number of compatible transcripts are reported. Other resources: AceView (July 2003 and August 2004 releases), ASD (July 2004) and ASAP (July 2004). | |||||||||
Bonizzoni et al. BMC Bioinformatics 2005 6:244 doi:10.1186/1471-2105-6-244 |
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