ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences

Paola Bonizzoni¹ , Raffaella Rizzi¹ and Graziano Pesole²

¹DISCo, University of Milan Bicocca, via Bicocca degli Arcimboldi, 8, Milan, 20135, Italy.

²Dipartimento di Scienze Biomolecolari e Biotecnologie, University of Milan, via Celoria, 26, Milan, 20133, Italy.

author email corresponding author email

BMC Bioinformatics 2005, 6:244doi:10.1186/1471-2105-6-244


Published:	5 October 2005

Additional File 1:

Splicing site prediction with and without the optimization strategy.

Format: PDF Size: 76KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional File 2:

Gencode annotation of 13 Encode regions.

Format: XLS Size: 475KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 3:

RT-negative introns detected by ASPIC.

Format: PDF Size: 97KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional File 4:

U12 dependent introns detected by ASPIC.

Format: PDF Size: 72KB Download file

This file can be viewed with: Adobe Acrobat Reader