Table 2

Assignments for the pathway isoleucine biosynthesis I. Only reactions with alternative assignments are listed (last column), and the selection number refers to Figure 2. For example, the top assignment selects the second gene (ILV1) to catalyze reaction 4.3.1.19. Assignments are sorted based on the normalized score. Second column marks which assignments are true assignments, and which are considered false assignments. For each assignment we list the total number of pairwise similarities, the number of positive and negative scoring pairs and the number of zero scoring pairs (when no expression data is available).
Number
 Match
 Normalized Score
 Number of Pairs
 Positive Pairs
 Negative Pairs
 Zero Pairs
 Assignments
1
 +
 10.32
 10
 10
 0
 0
 4.3.1.19 : 2
4.1.3.18 : 2
2.6.1.42 : 1
2
 +
 9.54
 10
 10
 0
 0
 4.3.1.19 : 2
4.1.3.18 : 1
2.6.1.42 : 1
3
 +
 7.37
 10
 10
 0
 0
 4.3.1.19 : 2
4.1.3.18 : 2
2.6.1.42 : 2
4
 -
 6.49
 10
 8
 2
 0
 4.3.1.19 : 3
4.1.3.18 : 2
2.6.1.42 : 1
5
 +
 6.30
 10
 9
 1
 0
 4.3.1.19 : 2
4.1.3.18 : 1
2.6.1.42 : 2
6
 -
 6.08
 10
 6
 0
 4
 4.3.1.19 : 1
4.1.3.18 : 2
2.6.1.42 : 1
7
 -
 5.52
 10
 6
 0
 4
 4.3.1.19 : 1
4.1.3.18 : 1
2.6.1.42 : 1
8
 -
 5.00
 10
 7
 3
 0
 4.3.1.19 : 3
4.1.3.18 : 1
2.6.1.42 : 1
9
 -
 4.78
 10
 8
 2
 0
 4.3.1.19 : 3
4.1.3.18 : 2
2.6.1.42 : 2
10
 -
 3.84
 10
 6
 0
 4
 4.3.1.19 : 1
4.1.3.18 : 2
2.6.1.42 : 2
11
 -
 3.00
 10
 6
 4
 0
 4.3.1.19 : 3
4.1.3.18 : 1
2.6.1.42 : 2
12
 -
 3.00
 10
 5
 1
 4
 4.3.1.19 : 1
4.1.3.18 : 1
2.6.1.42 : 2

Popescu and Yona BMC Bioinformatics 2005 6:217   doi:10.1186/1471-2105-6-217