DynGO: a tool for visualizing and mining of Gene Ontology and its associations
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* Corresponding author: Hongfang Liu hfliu@umbc.edu
BMC Bioinformatics 2005, 6:201 doi:10.1186/1471-2105-6-201
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Proceedings
Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL Simon Jupp, Robert Stevens, Robert Hoehndorf Journal of Biomedical Semantics 2012, 3(Suppl 1):S3 (24 April 2012) |
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Software
Da Huang, Brad T Sherman, Qina Tan, Jack R Collins, W Gregory Alvord, Jean Roayaei, Robert Stephens, Michael W Baseler, H Clifford Lane, Richard A Lempicki Genome Biology 2007, 8:R183 (4 September 2007) The DAVID gene functional classification tool uses a novel fuzzy clustering algorithm to condense a list of genes or associated biological terms into organized classes of related genes or biology, called biological modules. |
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Software
GOTax: investigating biological processes and biochemical activities along the taxonomic tree Andreas Schlicker, Jörg Rahnenführer, Mario Albrecht, Thomas Lengauer, Francisco S Domingues Genome Biology 2007, 8:R33 (8 March 2007) GOTax, a novel web-based platform that integrates protein annotation with protein family classification and taxonomy, allows for an extensive assessment of functional similarity between proteins and for comparing and analyzing the distribution of protein families and protein functions over different taxonomic groups. |
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Software
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool Rachel SG Sealfon, Matthew A Hibbs, Curtis Huttenhower, Chad L Myers, Olga G Troyanskaya BMC Bioinformatics 2006, 7:443 (10 October 2006) |
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Proceedings
Hongmei Sun, Hong Fang, Tao Chen, Roger Perkins, Weida Tong BMC Bioinformatics 2006, 7(Suppl 2):S23 (26 September 2006) |
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Methodology article
Gene functional similarity search tool (GFSST) Peisen Zhang, Jinghui Zhang, Huitao Sheng, James J Russo, Brian Osborne, Kenneth Buetow BMC Bioinformatics 2006, 7:135 (14 March 2006) |