BMC Bioinformatics

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FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform

Philippe Gouret*, Vérane Vitiello, Nathalie Balandraud, André Gilles, Pierre Pontarotti and Etienne GJ Danchin

BMC Bioinformatics 2005, 6:198 doi:10.1186/1471-2105-6-198

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BioMed Central: 10 citations

Research article   Open Access

Comparative transcriptomic analysis of follicle-enclosed oocyte maturational and developmental competence acquisition in two non-mammalian vertebrates

Maella Gohin, Julien Bobe, Franck Chesnel BMC Genomics 2010, 11:18 (8 January 2010)

Research article   Open Access Highly Accessed

Nme protein family evolutionary history, a vertebrate perspective

Thomas Desvignes, Pierre Pontarotti, Christian Fauvel, Julien Bobe BMC Evolutionary Biology 2009, 9:256 (23 October 2009)

Research article   Open Access

In silico identification and molecular characterization of genes predominantly expressed in the fish oocyte

Julien Bobe, Thaovi Nguyen, Sophie Mahé, Philippe Monget BMC Genomics 2008, 9:499 (23 October 2008)

Research article   Open Access

GPR50 is the mammalian ortholog of Mel1c: Evidence of rapid evolution in mammals

Laurence Dufourny, Anthony Levasseur, Martine Migaud, Isabelle Callebaut, Pierre Pontarotti, Benoit Malpaux, Philippe Monget BMC Evolutionary Biology 2008, 8:105 (9 April 2008)

Software   Open Access Highly Accessed

High-throughput bioinformatics with the Cyrille2 pipeline system

Mark WEJ Fiers, Ate van der Burgt, Erwin Datema, Joost CW de Groot, Roeland CHJ van Ham BMC Bioinformatics 2008, 9:96 (12 February 2008)

Research article   Open Access Highly Accessed

Molecular evolution of the human SRPX2 gene that causes brain disorders of the Rolandic and Sylvian speech areas

Barbara Royer, Dinesh C Soares, Paul N Barlow, Ronald E Bontrop, Patrice Roll, Andrée Robaglia-Schlupp, Antoine Blancher, Anthony Levasseur, Pierre Cau, Pierre Pontarotti, Pierre Szepetowski BMC Genetics 2007, 8:72 (18 October 2007)

Research article   Open Access

Tracking the connection between evolutionary and functional shifts using the fungal lipase/feruloyl esterase A family

Anthony Levasseur, Philippe Gouret, Laurence Lesage-Meessen, Michèle Asther, Marcel Asther, Eric Record, Pierre Pontarotti BMC Evolutionary Biology 2006, 6:92 (8 November 2006)

Software   Open Access

Simplifying gene trees for easier comprehension

Paul-Ludwig Lott, Marvin Mundry, Christoph Sassenberg, Stefan Lorkowski, Georg Fuellen BMC Bioinformatics 2006, 7:231 (27 April 2006)

Research article   Open Access Highly Accessed

Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals

Etienne GJ Danchin, Philippe Gouret, Pierre Pontarotti BMC Evolutionary Biology 2006, 6:5 (18 January 2006)

The absence of certain gene families that are conserved throughout other eukaryotes suggests that the human genome, which is generally considered to have evolved to high levels of complexity, has also undergone simplification and specific gene loss.

Methodology article   Open Access

A rigorous method for multigenic families' functional annotation: the peptidyl arginine deiminase (PADs) proteins family example

N Balandraud, P Gouret, EGJ Danchin, M Blanc, D Zinn, J Roudier, P Pontarotti BMC Genomics 2005, 6:153 (4 November 2005)