BMC Bioinformatics

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Evaluation of normalization methods for cDNA microarray data by k-NN classification

Wei Wu*, Eric P Xing, Connie Myers, I Saira Mian and Mina J Bissell

BMC Bioinformatics 2005, 6:191 doi:10.1186/1471-2105-6-191

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Research   Open Access

Lung cancer gene expression database analysis incorporating prior knowledge with support vector machine-based classification method

Peng Guan, Desheng Huang, Miao He, Baosen Zhou Journal of Experimental & Clinical Cancer Research 2009, 28:103 (18 July 2009)

Methodology article   Open Access Highly Accessed

A comparison on effects of normalisations in the detection of differentially expressed genes

Monica Chiogna, Maria Sofia Massa, Davide Risso, Chiara Romualdi BMC Bioinformatics 2009, 10:61 (13 February 2009)

Methodology article   Open Access

Optimization of cDNA microarrays procedures using criteria that do not rely on external standards

Torunn Bruland, Endre Anderssen, Berit Doseth, Hallgeir Bergum, Vidar Beisvag, Astrid Lægreid BMC Genomics 2007, 8:377 (18 October 2007)

Methodology article   Open Access

Orthogonal projections to latent structures as a strategy for microarray data normalization

Max Bylesjö, Daniel Eriksson, Andreas Sjödin, Stefan Jansson, Thomas Moritz, Johan Trygg BMC Bioinformatics 2007, 8:207 (18 June 2007)

Research article   Open Access Highly Accessed

Comparison of normalization methods for CodeLink Bioarray data

Wei Wu, Nilesh Dave, George C Tseng, Thomas Richards, Eric P Xing, Naftali Kaminski BMC Bioinformatics 2005, 6:309 (28 December 2005)

Methodology article   Open Access Highly Accessed

An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments

Eugene Novikov, Emmanuel Barillot BMC Bioinformatics 2005, 6:293 (9 December 2005)

The assumption that the better the microarray spot, the more consistent the fluoresence intensity ratio, leads to an algorithm that provides a quantitative measure to identify poor spots using several quality characteristics and information from replicated spots.