Table 1

Numbers of differentially expressed genes discovered by five methods

FDR cutoff
BY
BH
SPLOSH
Mix-all
RIR

0.0001
1397
1730
2876
2542
2074
0.001
1730
2162
3134
2958
2485
0.01
2160
2849
3467
3694
3382
0.05
2670
3661
5654
4594
4548

Jain et al. BMC Bioinformatics 2005 6:187   doi:10.1186/1471-2105-6-187