Table 1

Segmentation results obtained from MGA alignments and included in the MOSAIC database. For each segmentation result, the first column describes the species and genomes used for segmentation analyses; the number of compared strains is indicated between parentheses. Total loop sizes and loop number of each genome are entered in the same order as strain names, and separated by '+'. Coverage corresponds to the ratio between backbone size and total genome size of a strain; here the mean value for all compared strains is given in percents.

Compared genomes (numbers of strains)

Backbone size (Mb)

Cumulative loop size (kb) [Loop number]

Coverage (mean)


Agrobacterium tumefaciens

C58 Cereon circ X C58 Univ. Wash circ (2)

2.09

751[24]+751[25]

74 %

C58 Cereon lin RC X C58 Univ. Wash lin (2)

1.82

252[13]+253[13]

88 %

Bacillus anthracis

Ames X Ames 'Ancestor' (2)

3.93

528[26]+528[24]

90 %

Bacillus cereus

ATCC14579 X ATCC10987 (2)

4.02

1390[2878]+1203[2872]

76 %

Chlamydophila pneumoniae

AR39 RC+TR X CWL029 X J138 X TW183 (4)

1.22

10[13]+10[13]+7[11]+6[12]

99%

CWL029 X J138 X TW183 (3)

1.21

15[14]+11[12]+10[13]

99 %

CWL029 X J138 (2)

1.21

21[15]+17[14]

99 %

J138 X TW183 (2)

1.22

9[9]+8[10]

99 %

CWL029 X TW183 (2)

1.22

13[6]+9[6]

99 %

AR39 RC+TR X CWL029 (2)

1.22

8[7]+8[7]

99%

Escherichia coli

K-12 X Sakai X EDL933 X CFT073 (4)

3.52

1119[848]+1978[830]+2008[830]+1711[811]

68 %

K-12 X Sakai X CFT073 (3)

3.73

904[827]+1763[795]+1496[770]

73 %

Helicobacter pylori

26695 X J99 (2)

1.24

428[957]+403[967]

75 %

Listeria monocytogenes

EGD X 4b F2365 (2)

2.67

270[644]+230[638]

92 %

Mycobacterium tuberculosis

CDC1551 X H37Rv (2)

4.19

217[164]+225[162]

95 %

Staphylococcus aureus

MW2 X MU50 X N315 (3)

2.59

226[388]+283[382]+220[388]

92 %

Streptococcus agalactiae

2603V/R X NEM316 (2)

1.88

276[135]+327[132]

86 %

Streptococcus pneumoniae

R6 X TIGR4 (2)

1.91

128[282]+250[294]

91 %

Streptococcus pyogenes

M1GAS X MGAS315 X MGAS8232 (3)

1.62

235[275]+283[282]+277[282]

86 %

M1GAS X MGAS315 (2)

1.64

210[191]+258[192]

88 %

M1GAS X MGAS8232 (2)

1.65

206[225]+249[231]

88 %

Vibrio vulnificus

YJ016 K2 X CMCP6 K2 TR (2)

1.63

222[198]+210[199]

89 %

YJ016 K1 RC X CMCP6 K1 TR (2)

2.73

628[340]+555[338]

82%


Chiapello et al. BMC Bioinformatics 2005 6:171   doi:10.1186/1471-2105-6-171

Open Data