|
Databases searched and classification information assigned by AutoFACT |
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| Database |
Classification Information |
Reference |
|
|
||
| European Ribosomal Database |
Large subunit (LSU) ribosomal RNAs Small subunit (SSU) ribosomal RNAs |
[25] |
| Uniprot's UniRef 90 |
GeneOntology terms Enzyme Commission numbers Locus names |
[16,26] |
| Uniprot's UniRef100 |
||
| Clusters of Orthologous Groups (COG) |
Functional categories |
[27,28] |
| Kyoto Encyclopedia of Genes and Genomes (KEGG) |
Metabolic pathways Enzyme Commission numbers Locus names |
[29,30] |
| Protein Familes Database (Pfam) |
Protein domains |
[31] |
| Smart |
Signaling domains Domain architectures |
[32] |
| NCBI's non-redundant database (nr) |
N/A |
[33] |
| NCBI's est_others database |
||
Koski et al. BMC Bioinformatics 2005 6:151 doi:10.1186/1471-2105-6-151 |
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