Table 5

Top ranking genes by Z-score (top 24 genes, this paper), by TNoM score (top 30 genes [13]1), and by differential expression in AML or in ALL (top 25 genes, [14]2). As the Z-score can give genes equal scores, a rank of 1 can be assigned to several genes. In our study 12 genes are ranked 1, in that of [13] 3 are ranked 1. The lowest place in a total ordering of the genes is indicated by figure in parenthesis, e.g. (≤12). Genes ranked in column 5 cannot appear in column 6, and vice versa, as indicated by (-). Otherwise, a blank entry indicates a ranking outside of the top 24, 25 or 30 genes respectively.

Gene

Description

Rank by Z-score

Rank by TNoM1

Rank in AML2

Rank in ALL2


M23197

Myeloid cell surface antigen CD33

1 (≤12)

1 (≤3)

22 (≤22)

-

X04145

T-cell surface glycoprotein CD3

1 (≤12)

M31211

Myosin light chain

1 (≤12)

6 (≤20)

-

4 (≤4)

M31303

Leukemia-associated phosphoprotein

2 (≤13)

7 (≤32)

-

11 (≤13)

U50136

Leukotriene C4

3 (≤24)

7 (≤32)

3 (≤3)

-

M28170

B-lymphocyte surface antigen CD19

3 (≤24)

J04132

T-cell surface glycoprotein CD3

3 (≤24)

X95735

Zyxin

1 (≤3)

6 (≤6)

-

M55150

Fumarylacetoacetate

6 (≤20)

1 (≤1)

-

X59417

Proteasome iota chain

6 (≤20)

-

3 (≤3)

U22376

C-myb

-

1 (≤1)


Jirapech-Umpai and Aitken BMC Bioinformatics 2005 6:148   doi:10.1186/1471-2105-6-148

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