Table 3

Experimental verification of IAs corresponding to Ensembl 5' extensions. The extensions are separated according to whether the 5'-most Ensembl exon also existed in TWINSCAN and/or SGP2 (linked) or not (unlinked) (see Figure 3).

Experimentally verified Ensembl extensions

Ensembl extensions

Total tested

No amplimer

Amplimer correctly predicted

Amplimer but junction not correctly predicted


linked

60

36 (60%)

11 (18%)

13(22%)

unlinked

29

27 (93%)

2 (7%)

0


Eyras et al. BMC Bioinformatics 2005 6:131   doi:10.1186/1471-2105-6-131

Open Data