Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test

doi:10.1186/1471-2105-6-109

BMC Bioinformatics
Volume 6

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Methodology article

Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test

Irina Abnizova¹ , Rene te Boekhorst² , Klaudia Walter¹ and Walter R Gilks¹

¹MRC Biostatistics Unit, Institute of Public Health, Robinson Way, Cambridge CB2 2SR, UK

²Computer Science Department, University of Hertfordshire, College Lane, AL10 92BA, Hatfield Campus, UK

author email corresponding author email

BMC Bioinformatics 2005, 6:109doi:10.1186/1471-2105-6-109


Published:	27 April 2005

Additional files

Additional File 1:

Contains short introduction and notation for Supplementary Material

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Additional File 2:

Contains Supplementary Table1 with results of Fluffy-tail test and Coefficients of Variation for some more experimentally verified regulatory regions for other than Fruit fly species.

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Additional File 3:

Contains a visual example of F dependence on the number of randomisations r.

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Additional File 4:

Gives some more details about spatial clustering threshold

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Additional File 5:

Shows some examples for consistence of fluffiness for different word length, tables.

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Additional File 6:

Shows some examples for consistence of fluffiness for different word length in the histogram form

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Additional File 7:

Consistent fluffiness and coefficient of variation for spatial cluster size for some example sequences.

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Additional File 8:

Contains the Figures showing fluffiness and spatial clustering of similar words for NCNR 3L4 region.

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Additional File 9:

Contains the Figures showing fluffiness and spatial clustering of similar words for NCNR repeat-masked 3L4 region.

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Additional File 10:

Contains the Figures showing fluffiness and spatial clustering of similar words for knirps regulatory region

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Additional File 11:

Contains the Figures showing fluffiness and spatial clustering of similar words for abdominantA regulatory region.

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Additional File 12:

Contains the Figures showing fluffiness and spatial clustering of similar words for internal exon 2r4.

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