Composition of redefined Affymetrix probe-sets based on overlap with cDNA clone insert sequence. Stacked histograms show the distribution of probe-set size for sets consisting of a single Affymetrix-defined probe-set (black) and for those comprised of probes originally grouped into separate probe-sets by Affymetrix (gray). A, NCI-60 10 k cDNA microarray to HuFL alternative CDF. B, Breast cancer 8 k cDNA microarray to HuFL alternative CDF. C, Breast cancer 8 k cDNA microarray to HG-U95Av2 alternative CDF. D, Lung cancer 22 k cDNA microarray to HG-U95Av2 alternative CDF.
Carter et al. BMC Bioinformatics 2005 6:107 doi:10.1186/1471-2105-6-107