Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements

doi:10.1186/1471-2105-6-107

BMC Bioinformatics

Volume 6

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Carter SL
Eklund AC
Mecham BH
Kohane IS
Szallasi Z

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Kohane IS
Szallasi Z
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Methodology article

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements

Scott L Carter¹ , Aron C Eklund² , Brigham H Mecham¹ , Isaac S Kohane¹ and Zoltan Szallasi¹

¹Children's Hospital Informatics Program, Harvard Medical School, Boston, MA, 02115 USA

²Laboratory of Functional Genomics, Brigham and Women's Hospital, 65 Landsdowne Street, Cambridge, MA 02139, USA

author email corresponding author email

BMC Bioinformatics 2005, 6:107doi:10.1186/1471-2105-6-107


Published:	25 April 2005

Additional files

Additional File 1:

ZIP of 4 files allowing the remapping Affymetrix probe-sets described in this manuscript. These files can be used with the "altcdfenvs" package in Bioconductor to implement the redefinition of probe-sets based on sequence-matching with each of the 4 cDNA datasets described.

Format: ZIP Size: 1.3MB Download file